PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Function |

Basic Information? help Back to Top

TF ID

Pgl006288

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 248aa MW: 28415.9 Da PI: 6.9343

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S29740671	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-18173	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	106.1	2.5e-33	40	125	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evl+Li++r+ +e+r+ + k plWee+s +m++ g++rs+k+Ckekwen+nk+++k ke++kkr +e+ +tcpyf+ql+a Pgl006288 40 RWPKPEVLTLIKLRSGLEQRFHEPGPKSPLWEEISTAMASLGYNRSAKRCKEKWENINKYFRKAKESNKKR-PENAKTCPYFHQLDA 125 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.097	33	97	IPR017877	Myb-like domain
SMART	SM00717	0.0012	37	99	IPR001005	SANT/Myb domain
CDD	cd12203	1.39E-29	39	104	No hit	No description
Pfam	PF13837	2.2E-23	39	126	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
XNNLNNPNNL NNPNADEDHQ VVVHHEDIKD LSSFDPNSKR WPKPEVLTLI KLRSGLEQRF 60 HEPGPKSPLW EEISTAMASL GYNRSAKRCK EKWENINKYF RKAKESNKKR PENAKTCPYF 120 HQLDALYKKR NLANRQNKIM EKDSMVNGND QKVEDQETEE LVEHEQPSGS NRENTHAHHS 180 HNQQGDHGAD ILAVMPSAQG EPHAYNHERT NPNSSSTTRD ASSFMAMVHK LTSDHPPEFN 240 MSTSSNTE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.5220	0.0	cone\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024402443.1	3e-55	trihelix transcription factor GTL1-like
Swissprot	Q39117	5e-42	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A176VWE5	3e-55	A0A176VWE5_MARPO; Uncharacterized protein
TrEMBL	A0A2R6W4G1	2e-55	A0A2R6W4G1_MARPO; Uncharacterized protein
STRING	PP1S19_341V6.1	1e-54	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-45	Trihelix family protein