PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl005530

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 284aa MW: 32185 Da PI: 7.3443

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55347580	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-5031	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.4	1.6e-54	3	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeelvv+yLkkk+++++l++ ++i+e+d+yk++PwdLp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ ++++ Pgl005530 3 LPPGFRFHPTDEELVVHYLKKKATSSPLPV-SIIAEIDLYKFDPWDLPGKTTYGENEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPILTSaSRQK 101 79**************************.89***********8888899*********************************99878888 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy+gr pkg ktdW+mheyrl Pgl005530 102 IGVKKALVFYRGRPPKGIKTDWIMHEYRL 130 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-65	2	161	IPR003441	NAC domain
PROSITE profile	PS51005	62.663	3	160	IPR003441	NAC domain
Pfam	PF02365	3.6E-28	4	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MELPPGFRFH PTDEELVVHY LKKKATSSPL PVSIIAEIDL YKFDPWDLPG KTTYGENEWY 60 FFSPRDRKYP NGARPNRAAA SGYWKATGTD KPILTSASRQ KIGVKKALVF YRGRPPKGIK 120 TDWIMHEYRL ADGISKPSSF ASRKGSLRLD DWVLCRIYKK NRHSPRMAES EKDESHVEEG 180 SSSLLDIHHD QRLQLPKSGP FSSLLASAVD ELDESLIDVE SSQETGYQGN PLFPSNSRNN 240 NISNNNDSEN GPTILNTLQP QAFHEEKVLG TMGDFQQIYQ SHFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-73	1	161	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-73	1	161	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-73	1	161	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-73	1	161	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-73	1	161	18	169	NAC domain-containing protein 19
3swm_B	1e-73	1	161	18	169	NAC domain-containing protein 19
3swm_C	1e-73	1	161	18	169	NAC domain-containing protein 19
3swm_D	1e-73	1	161	18	169	NAC domain-containing protein 19
3swp_A	1e-73	1	161	18	169	NAC domain-containing protein 19
3swp_B	1e-73	1	161	18	169	NAC domain-containing protein 19
3swp_C	1e-73	1	161	18	169	NAC domain-containing protein 19
3swp_D	1e-73	1	161	18	169	NAC domain-containing protein 19
4dul_A	1e-73	1	161	15	166	NAC domain-containing protein 19
4dul_B	1e-73	1	161	15	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.16693	0.0	needle

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269\|PubMed:22278768}.
Uniprot	TISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269\|PubMed:18813954, ECO:0000269\|PubMed:22278768}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021294335.1	1e-100	NAC transcription factor 56-like isoform X2
Swissprot	Q8H4S4	2e-91	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A482ERL1	1e-171	A0A482ERL1_9SPER; NAC3 domain protein
STRING	ERN03380	1e-100	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	6e-93	NAC domain containing protein 25

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]