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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl005420 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||||||
Protein Properties | Length: 289aa MW: 31428.8 Da PI: 5.9568 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.4 | 1.2e-11 | 5 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 +++WT eE+ l +v+++G+g W tI + R+ ++k++w++++ Pgl005420 5 KQKWTSEEEGALRAGVEKYGSGKWQTILKDPEfavclASRSNVDLKDKWRNLM 57 79*************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.197 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.65E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-14 | 5 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.30E-21 | 6 | 57 | No hit | No description |
SMART | SM00526 | 7.8E-12 | 119 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 1.1E-11 | 123 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.8E-13 | 123 | 194 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 21.414 | 124 | 192 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 6.9E-9 | 128 | 190 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGAPKQKWTS EEEGALRAGV EKYGSGKWQT ILKDPEFAVC LASRSNVDLK DKWRNLMSVT 60 AGGQGSKTPR VKSIAAVPLS SVSPLSPTAP AAGMLVKSEA TIPSADIVIY SPKSISASAR 120 NHSPRCDYDD MILEALTALR DPNGIDVTTI ASFMEERHQL PPSFRRTLGS KLKRLVSQEK 180 IIRIRNSYKL KDMGEPRAAV LGPRNSADGL KQLWYKPMDA ASLETINQAS MAAAMKMAEA 240 DAMAASAEEA AREAEYDTRL AEEADIFLKA VFEVFGQFSP PDDEEGFSL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.2700 | 0.0 | stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5AA99 | 0.0 | D5AA99_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72740.2 | 5e-43 | MYB_related family protein |