PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pgl004888

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 313aa MW: 35253.9 Da PI: 8.9842

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55341971	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-18573	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	107.8	7.4e-34	94	178	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k e++ Li++r++me+r++++ +k+plWee++ +m++ g+ rs+k+Ckekwen+nk+++k k++++kr +e+s+tcpyf+ql+ Pgl004888 94 RWPKPEIMSLIRLRTNMERRFQEAGAKGPLWEEIATNMSRLGYDRSAKRCKEKWENINKYFRKAKDSNRKR-PENSKTCPYFQQLD 178 8*******************************************************************8.9999******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.224	87	151	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.7E-4	92	150	IPR009057	Homeodomain-like
CDD	cd12203	1.74E-30	93	158	No hit	No description
Pfam	PF13837	8.0E-23	93	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
XKESKKELAE KKRGDVKKRL VWNASISSGP TNEPVRRAAD AAFISALQKI TGQNLQLPEI 60 FAPPPPQITM NPEAQDQQDM VIREKETYDP NNKRWPKPEI MSLIRLRTNM ERRFQEAGAK 120 GPLWEEIATN MSRLGYDRSA KRCKEKWENI NKYFRKAKDS NRKRPENSKT CPYFQQLDSL 180 YRQGALGFSN GGSSTTATST STKVSNQPDG VHDQTTTDEL VLQPCTSSHE NDERREAVEI 240 LGQLMPSSEG GCTHNNINND NNNNGSNGHP TPGASSNNNN CVQFFSGAAE NGCNWEGYPM 300 KLKIKQQQQH QQH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.6565	0.0	root\| stem\| vegetative bud

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	PP1S19_341V6.1	3e-53	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-42	Trihelix family protein