PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004534
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 334aa    MW: 35609.5 Da    PI: 4.4035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55344856PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-5735PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011308331123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                + C+ C++ F++   L +H    H
  Pgl004534 308 FNCQSCSRDFTSEGALSSHKAAkH 331
                78*****************87666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030667.4E-73185No hitNo description
PROSITE profilePS5015711.219308334IPR007087Zinc finger, C2H2
PROSITE patternPS000280310331IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEFWGVEVKP GEALACDPGD EKYLHMSQAA IGDKEGAKEN ERVSLYVHVD GKKFVLGTLS  60
RGKCDQIGLD LVFEKEFKLS HTSQSGSVFF SGYTTLDHEA LDGFPDDEDE SSEDEEEEIA  120
QAMALAAKEN GGKPGAKPVK PESKSPSTNK AAAKGKPEVK PPAKKQEDDS DEDDDDDDDD  180
EDMEDVSESD DGDEEDDSDE ESDDEDEEDE ETPKPAAGKK RPMPDSVTKS PSTDKKAKIS  240
TPAGGQKPGA DKGKKTEHVA TPYPKQGGKG PASGVKGKET PLGSKHQTPG SKGKNVSTPE  300
SGKKSGQFNC QSCSRDFTSE GALSSHKAAK HGGK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.67900.0cone| root| somatic embryo| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LKQ70.0B8LKQ7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-25histone deacetylase 2C