PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl004180
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 352aa    MW: 37862.7 Da    PI: 8.3871
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55347846PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-27402PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.00042472871055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + R +++ +++  L++l+ +      +K + a++L +A+ YIk Lq
  Pgl004180 247 KVRKEKLGERITALQQLVSPF-----GKTDTASVLLEAMGYIKFLQ 287
                667788899999******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.528237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0035241292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-11247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.95E-6247291No hitNo description
Gene3DG3DSA:4.10.280.101.6E-7247295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
XSTTSSVEIK DCWMNSPAAN DVSWTSNDVK ILPSSQHSRQ IAEQSRWIAS SSPFCSSSSC  60
NNNNNNTDNS NNNNNNNNAA GNRDAFCYGD GNAGKLLFRP ETFPCGPFTR LLDPSNNLPP  120
DSLELELEGF PASRKVSIPP VQLPGPLKAS ATFQSSNVLT FHSNMNKLEM PYTNPSPKPV  180
VVQQQKSGGS PSSSPSTSSS NNNLPKNTVD EGGECTTEQK RNSDQAGLSN TAFKKPRTEA  240
SAGAPMKVRK EKLGERITAL QQLVSPFGKT DTASVLLEAM GYIKFLQDQV QVLSSPYLKG  300
IPSNQKDGRG DQAKYDLRSR GLCLVPVSCT LHVANNNGAD FWTSGIGSGS KF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.16890.0needle| root| somatic embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2690.0A9P269_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.12e-40bHLH family protein