PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pgl004141

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 354aa MW: 38204.4 Da PI: 4.4347

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55332724	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-47470	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.1e-05	328	348	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C++ F + s L++H Pgl004141 328 HVCNTCSRNFATESALTQHNA 348 79*****************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.60.120.340	6.0E-4	20	95	IPR024057	Nucleoplasmin core domain
PROSITE profile	PS50157	10.907	328	354	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	330	351	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MEFWGVEVKP GEVLCCDPGD DKYLHLSQAA LGEIQNAKEN ERVLLNVHDD NKKIVLGALT 60 YGKCDQFSLD IMFSKPFKLS HSCTTGSVFF IGYTTVVEDV DGGMGGYEDS DSDSDDDRQA 120 QALMRRVKEN GQKEARLAKP ELMKDGVKQL KPESVLIDKA AAKAKPGERK SLPGKKPEEK 180 EESSEDDDEE DDDDDXDVDD DDDEDDEGME GSSDDEDESD EEEGDSDDES DEDKNRKMPK 240 VESSGKKRPL PDSSIKSPGT DKKAKVTPGG AQNQGTDGGK KGGPKISVSK EQIPSNKGQT 300 PKAKGGVGAK ESPKPSTTPG SGKKIGQHVC NTCSRNFATE SALTQHNAAK HGGK

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MEFWGVEVKP GEVLCCDPGD DKYLHLSQAA LGEIQNAKEN ERVLLNVHDD NKKIVLGALT  60
YGKCDQFSLD IMFSKPFKLS HSCTTGSVFF IGYTTVVEDV DGGMGGYEDS DSDSDDDRQA  120
QALMRRVKEN GQKEARLAKP ELMKDGVKQL KPESVLIDKA AAKAKPGERK SLPGKKPEEK  180
EESSEDDDEE DDDDDXDVDD DDDEDDEGME GSSDDEDESD EEEGDSDDES DEDKNRKMPK  240
VESSGKKRPL PDSSIKSPGT DKKAKVTPGG AQNQGTDGGK KGGPKISVSK EQIPSNKGQT  300
PKAKGGVGAK ESPKPSTTPG SGKKIGQHVC NTCSRNFATE SALTQHNAAK HGGK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.7855	0.0	needle\| stem\| vegetative bud

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9P2L8	0.0	A9P2L8_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	1e-21	histone deacetylase 3