PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pgl003644

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C3H

Protein Properties

Length: 380aa MW: 43122.2 Da PI: 7.6785

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55342075	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-15508	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.7	1.7e-07	125	146	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++ + G+C+ G +C FaHg Pgl003644 125 ETCVNYKK-GYCRKGLTCEFAHG 146 6799**.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.2E-4	118	147	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0083	121	147	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.413	121	148	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-4	126	146	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	38	156	179	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MDISISSPVL SPQFAFYSPS DGQGIATWID ANNVRSISEH LWKSNLHGVN QLFSDFCDSN 60 GRLQWNMGII EEDKGFEDQS SNEFRMYKFK VVICMRDTSH DWTRCPFAHR GERARRRHPS 120 LYCGETCVNY KKGYCRKGLT CEFAHGLFES WLHPHRYRTK RCKDGVNCNR RVCFFAHRDE 180 EIRFPSKPSS SKMKDHKNYS ITPRNRSACT NVVIPQIYNA ISQDVVGSPR GAHAALMLLE 240 PLYMNSPLQY NSPSPSSSSV SSGSFPGSSL GSPGCDVGDV VTAFRNVGLQ DEIYKINQSV 300 SQNHVNGDDQ YSSESGVHCG LQLLESGKKL RAEIYRKFWK DQIQKEYNTS AADQPDIAWV 360 SELVEEPSKT ESEHIFNELK

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MDISISSPVL SPQFAFYSPS DGQGIATWID ANNVRSISEH LWKSNLHGVN QLFSDFCDSN  60
GRLQWNMGII EEDKGFEDQS SNEFRMYKFK VVICMRDTSH DWTRCPFAHR GERARRRHPS  120
LYCGETCVNY KKGYCRKGLT CEFAHGLFES WLHPHRYRTK RCKDGVNCNR RVCFFAHRDE  180
EIRFPSKPSS SKMKDHKNYS ITPRNRSACT NVVIPQIYNA ISQDVVGSPR GAHAALMLLE  240
PLYMNSPLQY NSPSPSSSSV SSGSFPGSSL GSPGCDVGDV VTAFRNVGLQ DEIYKINQSV  300
SQNHVNGDDQ YSSESGVHCG LQLLESGKKL RAEIYRKFWK DQIQKEYNTS AADQPDIAWV  360
SELVEEPSKT ESEHIFNELK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.15785	0.0	stem

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	8e-46	C3H family protein