PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 387aa    MW: 42598.1 Da    PI: 4.7883
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55345488PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-43679PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-20181230255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Pgl003560 181 LYRGVRQRH-WGKWVAEIRLPRD---RTRLWLGTFDTAEEAAMAYDKAAYRLRG 230
                59******9.**********966...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-32180240No hitNo description
Gene3DG3DSA:3.30.730.104.4E-32181239IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23181239IPR016177DNA-binding domain
PROSITE profilePS5103223.196181238IPR001471AP2/ERF domain
SMARTSM003801.5E-36181244IPR001471AP2/ERF domain
PfamPF008479.3E-14182230IPR001471AP2/ERF domain
PRINTSPR003673.3E-11182193IPR001471AP2/ERF domain
PRINTSPR003673.3E-11204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDLITERLNS EGPDRQGFTF PTLVRHQNLG FSNSSVQEMF EESASSSSSP SNGDAKLEGL  60
DAWQNLRMPE ASQAFGNSEI LCSSSSFFPN LPSNGFGHSD GLVWRPSFQG QNQCSGESIG  120
SAMILYDLLH VQQIQQLQQQ LQLQQHQSAA ASIHQMGRNP LGPRAQPMKL HSSGLSKAAK  180
LYRGVRQRHW GKWVAEIRLP RDRTRLWLGT FDTAEEAAMA YDKAAYRLRG DYARLNFPHL  240
KRHLEANSFA PWTGNSVLPS AVDAKLQAIC QSLKLPMEKM SKTEESEEIS CAYENSGSLG  300
SVQDEDAKKN DVVSVKSETC ESDSSDDSTI TALNSAGESE SPSASKSETQ ADTETDTLCS  360
MPSFSASSIW AELDDYLLSI PSLDINW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20180238160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.51870.0needle| root| stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621406.17e-54ethylene-responsive transcription factor ERF060
TrEMBLB8LQ350.0B8LQ35_PICSI; Uncharacterized protein
STRINGERM942004e-54(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-34ERF family protein