PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003409
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 396aa    MW: 44480.9 Da    PI: 5.0132
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55335765PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-32642PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.34.6e-34551891128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                lp+G++F+P++e+l+ ++L++kv+  +      ++ +   ++e  +i++++P++Lp  vk++ +  +fF+++ ++y+tg+rk+r +++ +W++tgk+k+v
  Pgl003409  55 LPAGVKFDPSEEQLL-RHLAAKVRIGNarphslINDFILtLEEDdGICYTHPENLP-GVKQDGSYSHFFHRTTNAYTTGTRKRRRIDKFRWHKTGKTKKV 152
                799************.99****998886666552222333555546**********.677888899********************************** PP

        NAM  93 lskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                ++ +ge++g+kk++v++  +++ +k+ekt+Wvmh+y+l
  Pgl003409 153 YE-NGEQIGCKKIMVLHmtSAKGSKPEKTNWVMHQYHL 189
                **.999***********6645667778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-3540195IPR003441NAC domain
PROSITE profilePS5100528.31155206IPR003441NAC domain
PfamPF023652.5E-1456189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MARPWITNGR RIAMKIKNPT QIIESENGRN DANIACPNCN YQIDDSHVTQ EWPGLPAGVK  60
FDPSEEQLLR HLAAKVRIGN ARPHSLINDF ILTLEEDDGI CYTHPENLPG VKQDGSYSHF  120
FHRTTNAYTT GTRKRRRIDK FRWHKTGKTK KVYENGEQIG CKKIMVLHMT SAKGSKPEKT  180
NWVMHQYHLG TEDDEKEGEF VXIKNKIDKT DSGIPQEDAG TSNGKGDPPT PTTSTPPQPP  240
PEKQYTYFDR IEEEHLFYAS SPKAADLYAT IHRPSKPNET ECDGQTYLPD ATSLWAGESQ  300
YFEDSQEQMV GLFSCQEILE NQSCQENAEG TNNIPGLSDC GRIGGNTLGK EMHQSSYCDL  360
ANIDFDTPPD GPILDDSQFG SQESLLGWLN NFGDSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132136RKRRR
2133137KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.60160.0root| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046313.21e-107PREDICTED: NAC domain-containing protein 8 isoform X1
TrEMBLB8LLI00.0B8LLI0_PICSI; Uncharacterized protein
STRINGEOY021451e-106(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.15e-73NAC domain containing protein 44