PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002267
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 494aa    MW: 54877.9 Da    PI: 7.9424
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333741PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-40170PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.57.3e-18110198186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeev....skkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+++ +  L++a++e+  +l+rg+l++ +Weev    s+++++++ ++s +qCk+k +nl+kryk ++++ ++++  ++s++p++++++
  Pgl002267 110 EWSDSAIGRLLDAYTEKYVKLNRGNLRGRDWEEVacivSERCERQKSSKSIEQCKNKVDNLKKRYKSERHRLISGS-ATVSHWPWYKKMD 198
                5********************************822225666********************************95.5666********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.8E-20109200No hitNo description
Gene3DG3DSA:3.40.1160.103.4E-81249487IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B38.358254488IPR015963Uridylate kinase, bacteria
SuperFamilySSF536336.28E-64254487IPR001048Aspartate/glutamate/uridylate kinase
TIGRFAMsTIGR020753.4E-83257487IPR015963Uridylate kinase, bacteria
CDDcd042541.22E-132257488No hitNo description
PfamPF006962.3E-26258467IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
XFCMACEEDF VMLEAAHPHQ LPHHHHHHHH SQAFQSPQFL PNKQQQTLPH GHIDAHGINS  60
VESRKKVPGE DEDYSDAAFC SQGDPKCSPD FVQEIATHHH HHHHECFGEE WSDSAIGRLL  120
DAYTEKYVKL NRGNLRGRDW EEVACIVSER CERQKSSKSI EQCKNKVDNL KKRYKSERHR  180
LISGSATVSH WPWYKKMDQI VGSSVSKAVS DEDKSMGGTN SAMNMARPAK RFAVVTPSPV  240
GLSNNLKTKT LQTPRWRRVL LKISGTALAG NAQNVDPKVT SLIAREIAAV NRLGVEVAIV  300
VGGRNFFCGA SWVRSTGLDR ASADQIGMMA TVMNSIILQA DMENLGIQTR VQTAFKMSEI  360
AEPYIRRRAI RHLEKGRVVI FGAGTGNPFF STDTAAALRA SEINAEVVLK GTNVDGVYDC  420
DPRKNNNVIL DHISYRDFVT KGLQATAMDL TAITFCEENC IPVVIFNLHE PGNISRALTG  480
EQIGTLIDQT GKIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A2e-7325248746279Uridylate kinase
3nwy_B2e-7325248746279Uridylate kinase
3nwy_C2e-7325248746279Uridylate kinase
3nwy_D2e-7325248746279Uridylate kinase
3nwy_E2e-7325248746279Uridylate kinase
3nwy_F2e-7325248746279Uridylate kinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.127850.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278264.10.0PREDICTED: uncharacterized protein LOC104612522 isoform X1
TrEMBLA0A0D6R6P90.0A0A0D6R6P9_ARACU; Uncharacterized protein
STRINGXP_010278264.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-167Trihelix family protein