PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Function |

Publication

Basic Information? help Back to Top

TF ID

Pgl001178

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

YABBY

Protein Properties

Length: 189aa MW: 20690.5 Da PI: 8.4947

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55334102	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-36709	PU_unref	plantGDB	View CDS
PUT-175a-Picea_glauca-8049267	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	192.2	2.4e-59	8	155	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 s++eq+Cyv+CnfC+tilavsvPs+slf++vtvrCGhC +llsvn++ as l a + ++++ +++ + + s++ s+++ ++ Pgl001178 8 SAAEQLCYVHCNFCSTILAVSVPSSSLFNIVTVRCGHCNHLLSVNMMGASPPLEAGQ---------IQNDYSKDSASSSA------SPTISERT--GNSY 90 679****************************************999887776665.........23332222222211......11111111..1222 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +e+ ++ PPekrqrvPs ynrfikeeiqrika+nPdi h+eafsaaaknWahfP+ihfgl Pgl001178 91 AGNEAVKMFS-SIPPEKRQRVPSVYNRFIKEEIQRIKAKNPDIRHKEAFSAAAKNWAHFPHIHFGL 155 3334445555.67*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.0E-65	9	155	IPR006780	YABBY protein
SuperFamily	SSF47095	3.27E-7	99	149	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.6E-4	104	147	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSGCIESSAA EQLCYVHCNF CSTILAVSVP SSSLFNIVTV RCGHCNHLLS VNMMGASPPL 60 EAGQIQNDYS KDSASSSASP TISERTGNSY AGNEAVKMFS SIPPEKRQRV PSVYNRFIKE 120 EIQRIKAKNP DIRHKEAFSA AAKNWAHFPH IHFGLMLENN KQAAIDKGNL REGTQIGTVK 180 DGRMTTNLC

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.11509	0.0	stem\| vegetative bud

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006424060.2	3e-66	putative axial regulator YABBY 2 isoform X1
Swissprot	Q8GW46	4e-61	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D5ADY5	1e-124	D5ADY5_PICSI; Uncharacterized protein
STRING	XP_006487832.1	3e-65	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	5e-62	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]