PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000849
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family BBR-BPC
Protein Properties Length: 313aa    MW: 34823.5 Da    PI: 9.6618
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S40891487PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-40234PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind343.93.9e-10513131301
  GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.salpvg 98 
                mdddg  + r++   e++  +k++ gl+ ms++aerda+i ern+a+sekkaa+ae++ a  qrd a a+rn a++erd +++al +++++    + + +
  Pgl000849   1 MDDDGRLDiRHWDTLEQS--VKDHPGLKFMSVLAERDAAILERNTAFSEKKAAFAEKETAIFQRDVAYADRNTAILERDAAAAALDYARDGGWnGQRSLS 98 
                9************98887..*******************************************************************9998764567789 PP

  GAGA_bind  99 vqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader........... 186
                +++ls++k ++ l +  +p ++   ++ +r  +     p+ ea++ ++ +k+ k+++++k+  ++  +k k  ++++k+  +k++ +++           
  Pgl000849  99 CGTLSNAKILQVLAE--NPTFSAREYQtMRPINVAYPAPVLEAPPYEEPQKTAKRTSKKKDGEKESPSKRKSDGSEPKSLRQKKQRKPSvtteeglngev 196
                999*99999998877..77787777776788888888888888887777777776666666555555555554554444333333333356678999999 PP

  GAGA_bind 187 ..skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvD 284
                  +k+e+k++d+v+ng+ +D+s++P+PvC+CtG+ +qCY+WGnGGWqSaCCtt+iS+yPLP++++rrgaR+agrKmS+gaf+klLe+L aeGy+l+ p+D
  Pgl000849 197 tvVKKEQKNLDVVINGIVFDISAMPIPVCTCTGVAQQCYRWGNGGWQSACCTTSISMYPLPMNPNRRGARVAGRKMSGGAFRKLLERLGAEGYNLNYPID 296
                99************************************************************************************************** PP

  GAGA_bind 285 LkdhWAkHGtnkfvtir 301
                Lk++WAkHGtnkfvtir
  Pgl000849 297 LKSYWAKHGTNKFVTIR 313
                ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.1E-1221313IPR010409GAGA-binding transcriptional activator
PfamPF062171.6E-981313IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDDDGRLDIR HWDTLEQSVK DHPGLKFMSV LAERDAAILE RNTAFSEKKA AFAEKETAIF  60
QRDVAYADRN TAILERDAAA AALDYARDGG WNGQRSLSCG TLSNAKILQV LAENPTFSAR  120
EYQTMRPINV AYPAPVLEAP PYEEPQKTAK RTSKKKDGEK ESPSKRKSDG SEPKSLRQKK  180
QRKPSVTTEE GLNGEVTVVK KEQKNLDVVI NGIVFDISAM PIPVCTCTGV AQQCYRWGNG  240
GWQSACCTTS ISMYPLPMNP NRRGARVAGR KMSGGAFRKL LERLGAEGYN LNYPIDLKSY  300
WAKHGTNKFV TIR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852993.36e-99LOW QUALITY PROTEIN: barley B recombinant-like protein D
TrEMBLH1ZN640.0H1ZN64_PICSI; GAGA-binding transcriptional activator
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.26e-64basic pentacysteine 6