PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000483
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TALE
Protein Properties Length: 491aa    MW: 54718.1 Da    PI: 6.6193
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55347924PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-30697PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-091712081954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Pgl000483 171 FEHflHPYPKDADKHMLARQTGLTRNQVSNWFINARVR 208
                564459******************************88 PP
2BELL125.71.8e-4034105172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                erqelq+kkakL+ +l+eVd+rY+qy++q+q+v+ssFea ag g+ak YtslAl++iSrhFrcL+dai++qi
  Pgl000483  34 ERQELQMKKAKLVAMLDEVDQRYRQYYHQMQIVVSSFEATAGFGAAKTYTSLALQTISRHFRCLRDAISGQI 105
                79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.9E-337103IPR006563POX domain
PfamPF075265.4E-4019102IPR006563POX domain
PROSITE profilePS5007112.179149212IPR001356Homeobox domain
SMARTSM003898.1E-9152216IPR001356Homeobox domain
CDDcd000861.52E-11152213No hitNo description
SuperFamilySSF466894.71E-17154219IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-29155218IPR009057Homeodomain-like
PfamPF059202.5E-18169208IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
XPLWPGDGAA AAPTWRSTSA QETNDRPSEL SPAERQELQM KKAKLVAMLD EVDQRYRQYY  60
HQMQIVVSSF EATAGFGAAK TYTSLALQTI SRHFRCLRDA ISGQIRMTSK SLGEEDSTVS  120
GKGETSRLRF VDQQLRQQRA LQQLGMIQQH AWRPQRGLPE RSVSVLRAWL FEHFLHPYPK  180
DADKHMLARQ TGLTRNQVSN WFINARVRLW KPMVEEMYNE ETKETEVEHG SNEKTGKESG  240
EKKEDALSKE GAAGNNGNIH DHQSGKTTKL DNIAQDGGAD EKPTGAPKSE NASNLINARN  300
QSFGMGGTSD SQIFNETENE GIRQGQLKKA RNGTQECTSL LSPNMSIEVD LKSDETNSGE  360
FGDHKFSDER QNTEDYSFVH NAMVHPDNSG SFGSYQIGDL SRYGHESFTP RFSGSGGVSL  420
TLGLQRTDGL SLQGTQQNYM STQSLALGRR HDLGGNSSDY CNIETSAAHP ANIYENINIQ  480
PRKCFATQLM H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16158216563Homeobox protein Meis2
3k2a_B6e-16158216563Homeobox protein Meis2
4xrs_A5e-16158215158Homeobox protein Meis1
4xrs_B5e-16158215158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.117780.0needle| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021650408.11e-158BEL1-like homeodomain protein 1
RefseqXP_021650409.11e-158BEL1-like homeodomain protein 1
RefseqXP_021650410.11e-158BEL1-like homeodomain protein 1
RefseqXP_021650411.11e-158BEL1-like homeodomain protein 1
RefseqXP_021650412.11e-158BEL1-like homeodomain protein 1
RefseqXP_021650413.11e-158BEL1-like homeodomain protein 1
TrEMBLA0A0C9RM180.0A0A0C9RM18_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11489_4138 transcribed RNA sequence
STRINGPOPTR_0006s21950.11e-156(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-90BEL1-like homeodomain 1