PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pgl000373

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C3H

Protein Properties

Length: 613aa MW: 66741.5 Da PI: 5.5387

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55337687	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-45710	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.2e-06	561	584	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 ++++C +f+ C++G++C F H Pgl000373 561 FRKPCLYFSTPNGCRRGASCAFLH 584 689********************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.526	559	587	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-4	563	585	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MAAISLLEGI GALNGLAPKA AQTKPKNQVV KRVSWAPDYN LCKVRLFLAE DAPLQSDLAD 60 QDHLQAKQSR LWHAYGSGFE GNQLLGVGNN YTKQNIQEDS IVPETTWCCP PRFVMNPSWQ 120 VVAGDESLEV KLQYEREVRN LEAIYPRPSS IPPSPIEPLE PQEDYSDSDT PMIPLIPIED 180 DETGDLNEVP PSQDFGELGI GLYDPFGIMH NMKEMQPNCT GASSQGGDCV AMVPPSVDQQ 240 RQASLSISKP AAEPDITAAA AAAAAFDAIA KSNEKGNMID HDMVLKILSN PQIIEALTSQ 300 HRRNNNIQMD LMPNLHAIDS KHDAPKTPCN VDQDQSPLII SGLQGACQVA SSGVVGNNRS 360 SLVTSEMACG NFQGPLHLFN TEAKIFGAAV AVAQTSTSMT FSPPLPPMAG QASSHLSSRP 420 ATVSVSTAMG VCQPSMGAST GASTAVSVNQ SSFPDEQYYK NLIQKHGLQN DNDQIKHPHG 480 LQNDNDQIKH LHGLQNDNDQ IKHPHGFQYY RDLIQQHGGA DKFEEQKCQG SHILSGNNDR 540 VGGGNFANNE RAFGDPNRFK FRKPCLYFST PNGCRRGASC AFLHEDFDRP KFDVSDLKHS 600 KRAKAETEAP VRN

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MAAISLLEGI GALNGLAPKA AQTKPKNQVV KRVSWAPDYN LCKVRLFLAE DAPLQSDLAD  60
QDHLQAKQSR LWHAYGSGFE GNQLLGVGNN YTKQNIQEDS IVPETTWCCP PRFVMNPSWQ  120
VVAGDESLEV KLQYEREVRN LEAIYPRPSS IPPSPIEPLE PQEDYSDSDT PMIPLIPIED  180
DETGDLNEVP PSQDFGELGI GLYDPFGIMH NMKEMQPNCT GASSQGGDCV AMVPPSVDQQ  240
RQASLSISKP AAEPDITAAA AAAAAFDAIA KSNEKGNMID HDMVLKILSN PQIIEALTSQ  300
HRRNNNIQMD LMPNLHAIDS KHDAPKTPCN VDQDQSPLII SGLQGACQVA SSGVVGNNRS  360
SLVTSEMACG NFQGPLHLFN TEAKIFGAAV AVAQTSTSMT FSPPLPPMAG QASSHLSSRP  420
ATVSVSTAMG VCQPSMGAST GASTAVSVNQ SSFPDEQYYK NLIQKHGLQN DNDQIKHPHG  480
LQNDNDQIKH LHGLQNDNDQ IKHPHGFQYY RDLIQQHGGA DKFEEQKCQG SHILSGNNDR  540
VGGGNFANNE RAFGDPNRFK FRKPCLYFST PNGCRRGASC AFLHEDFDRP KFDVSDLKHS  600
KRAKAETEAP VRN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.23381	0.0	needle\| root