PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf19371g00002.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 99aa MW: 11210.9 Da PI: 8.7568

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf19371g00002.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.7	2.6e-40	11	97	1	87
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+l+r+C+++C +apyf +++pkkfa+vhk+FGasnv+k+l+++pe++red+++slvyeAe+r+rdPvyG++g i +lq+++ Peinf101Scf19371g00002.1 11 SCAACKFLKRRCTPNCQFAPYFRSDEPKKFAIVHKVFGASNVSKILNEVPEDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKM 97 6***********************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.698	10	99	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-39	11	97	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MKSHEPRSSS SCAACKFLKR RCTPNCQFAP YFRSDEPKKF AIVHKVFGAS NVSKILNEVP 60 EDQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMVE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	6	97	6	97	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	6	97	6	97	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786680.1	6e-66	PREDICTED: LOB domain-containing protein 21-like
Refseq	XP_016497209.1	7e-66	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	7e-55	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1S4C8C5	2e-64	A0A1S4C8C5_TOBAC; LOB domain-containing protein 21-like
TrEMBL	A0A1U7XJL5	1e-64	A0A1U7XJL5_NICSY; LOB domain-containing protein 21-like
STRING	XP_009786680.1	2e-65	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	3e-57	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]