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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf12610g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | CO-like | ||||||||
Protein Properties | Length: 304aa MW: 34395.7 Da PI: 6.5007 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.9 | 3.7e-07 | 3 | 35 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 r+C+ ++ ++ fC+ + +lC C +++H Peinf101Scf12610g00001.1 3 RRCDSCKTTSATVFCKADMAFLCLGCDSKIHAA 35 79******99*********************54 PP | |||||||
2 | zf-B_box | 24.6 | 5.4e-08 | 45 | 90 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++ p+ Peinf101Scf12610g00001.1 45 VWVCEVCEHAPASVTCKADAAALCVTCDHDIHSAnplarrHERLPI 90 689*****************************66888888998876 PP | |||||||
3 | CCT | 70 | 5.8e-24 | 241 | 285 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e Peinf101Scf12610g00001.1 241 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRNE 285 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.1E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.84 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.4E-5 | 3 | 42 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.01E-6 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 10.751 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.6E-6 | 45 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.73E-7 | 46 | 90 | No hit | No description |
SMART | SM00336 | 2.2E-9 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.1E-18 | 241 | 283 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.787 | 241 | 283 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MARRCDSCKT TSATVFCKAD MAFLCLGCDS KIHAANKLAS RHARVWVCEV CEHAPASVTC 60 KADAAALCVT CDHDIHSANP LARRHERLPI VPFYDSASAK SRAADETQQP ETEEEAEAES 120 WLLQAPNTNN NIGFEGNEYN KSAEYLFSDV DPYVDMEMIT DQKPCTDIQL HQEYKEADCV 180 VPHVQNKNNN EMIHLQGPVV DGYPTYHEMD FTGSKPFMYN FSTQSISQSV CTLIPLSSLD 240 REARVLRYRE KRKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRNEIEIDS LIASEASYGV 300 VPSF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009604722.1 | 1e-163 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like | ||||
Refseq | XP_016495106.1 | 1e-163 | PREDICTED: zinc finger protein CONSTANS-LIKE 4-like isoform X2 | ||||
Swissprot | Q940T9 | 2e-88 | COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4 | ||||
TrEMBL | A0A1S4C1S7 | 1e-161 | A0A1S4C1S7_TOBAC; zinc finger protein CONSTANS-LIKE 4-like isoform X2 | ||||
STRING | XP_009604722.1 | 1e-162 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 3e-88 | CONSTANS-like 4 |