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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf10366g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NF-YA | ||||||||
Protein Properties | Length: 136aa MW: 15192 Da PI: 6.7972 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 41.2 | 5.4e-13 | 27 | 48 | 37 | 58 |
CBFB_NFYA 37 pylheSRhkhAlrRpRgsgGrF 58 pylheSRh+hAl+R+Rg+gGrF Peinf101Scf10366g00015.1 27 PYLHESRHRHALNRARGPGGRF 48 8********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51152 | 17.047 | 1 | 51 | IPR001289 | Nuclear transcription factor Y subunit A |
SMART | SM00521 | 0.0045 | 3 | 51 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.1E-10 | 27 | 48 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
VQSQMLGTVS ARMPLPLDLQ QDEPIFPYLH ESRHRHALNR ARGPGGRFLN IKKLRESKSP 60 DLIDDQHVPV SNELQLNTKM LEPDVYQSTP ASSGITSCSN GDAIYHQQSL KYSAFSLHIR 120 GALEQDKGEN DLSTNP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM489761 | 1e-173 | AM489761.1 Petunia x hybrida partial mRNA for YA6 (nf-YA gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342951.1 | 4e-57 | PREDICTED: nuclear transcription factor Y subunit A-3-like | ||||
TrEMBL | A5PGU9 | 3e-73 | A5PGU9_PETHY; YA6 (Fragment) | ||||
STRING | PGSC0003DMT400006358 | 1e-56 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13966 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 7e-18 | nuclear factor Y, subunit A5 |