PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf09533g00004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 686aa    MW: 74713.4 Da    PI: 4.4946
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf09533g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.2e-095178127
                              --S---SGGGGTS.--TTTTT-SS-SSS CS
                   zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                              +kt+lC++f+r+   C++G++C++aHg+
  Peinf101Scf09533g00004.1 51 WKTSLCSYFRRNDnSCSHGETCRYAHGE 78
                              8**********87*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5168734.2861686IPR010280(Uracil-5)-methyltransferase family
Gene3DG3DSA:4.10.1000.101.3E-124482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.61E-74783IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3055079IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-45078IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-65178IPR000571Zinc finger, CCCH-type
SuperFamilySSF533353.19E-40164288IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.19E-40331448IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.9E-63346448IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138477.6E-10392449IPR025714Methyltransferase domain
CDDcd024402.43E-7394448No hitNo description
Gene3DG3DSA:3.40.50.1501.9E-63570625IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059587.7E-8570621IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533353.19E-40573626IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300581613IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.9E-63662686IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533353.19E-40671685IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MSTEETLNPK MNDHDSSDQI NPTANIVPTE KRKREEEPEP EAEQKQKHPL WKTSLCSYFR  60
RNDNSCSHGE TCRYAHGESE LRLRPDNTWD PTSERAKKIA KKDDGEKDDV AKEEEKECND  120
VMMTEALDES DDVEGCSSSG SDLSKCLVNL PMKWSSDNLR MFLIQHCEFS VGYSVLGKPT  180
VGFQLGNFRE GVTAVEEPVD CPNVSRISCK YAAIFQEFLQ QSTLPIWNRL NNTGFWRQLT  240
VREGRMPGNS VEVENPESNI SEVMLIVQVC TLALDDALVN DELQSMAKSF STGASSSSPT  300
LPLTSLVVQD HTGISNAAPA DAPLRLLPLS KGESHSELQA DNAVAEAKIH DFINGLKFCI  360
SPTAFFQVNT LAAEKLYSLA GDWAGLGPDT LLFDVCCGTG TIGLTLANRV GMVVGIEMNA  420
SAVSDAQRNA EINGIKNCRF VCGKAEDVMG SVLREYLASP QLVDGIPDTE EENNPENATS  480
TEKTDSLVNA SETDEGSGNG SANGNSACVE SDITPIGNTD STDSTVETEG KGGLECTNGK  540
SLSESSANGT TESETQLKES CSSENLTTTV QQFKNVVAIV DPPRVGLHPT VIKLLRTNSR  600
LRRLVYISCN PESLVANAIE LCTPSPDEIE KGNNKNNRGW RKMSSAGLAR HRAKSMPTSE  660
PFQPVKAMAV DLFPHTPHCE LVMLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-18349455265371Uncharacterized RNA methyltransferase SP_1029
5xj2_A4e-18349455265371Uncharacterized RNA methyltransferase SP_1029
5xj2_B4e-18349455265371Uncharacterized RNA methyltransferase SP_1029
5xj2_C4e-18349455265371Uncharacterized RNA methyltransferase SP_1029
5xj2_D4e-18349455265371Uncharacterized RNA methyltransferase SP_1029
5zq0_A4e-18349455266372Uncharacterized RNA methyltransferase SP_1029
5zq1_A4e-18349455265371Uncharacterized RNA methyltransferase SP_1029
5zq8_A4e-18349455265371Uncharacterized RNA methyltransferase SP_1029
5zq8_B4e-18349455265371Uncharacterized RNA methyltransferase SP_1029
5zth_A4e-18349455266372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2316701e-87AC231670.1 Solanum tuberosum chromosome 11 clone RH121D01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226002.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A314KSH50.0A0A314KSH5_NICAT; Zinc finger ccch domain-containing protein 24
STRINGSolyc11g069340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA807488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.11e-174C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]