PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf08723g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NF-YA | ||||||||
Protein Properties | Length: 312aa MW: 34130.5 Da PI: 8.1344 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.8 | 1.3e-31 | 168 | 224 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RR++Rak+e ekkl +k rkpylheSRh+hAl+R+R+sgGrF Peinf101Scf08723g00006.1 168 QEPVYVNAKQYHGILRRRESRAKAELEKKL-IKVRKPYLHESRHQHALKRARASGGRF 224 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.7E-34 | 166 | 227 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.073 | 167 | 227 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.8E-27 | 169 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.9E-23 | 170 | 192 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 172 | 192 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.9E-23 | 201 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MQSKSESANC GEARTYNVPN SFVNSEPWWN TAGYNPVSLG LMRGSASDSS SREHSVDGQT 60 QSDGGVNDED GDAPEKSQST VPIHPDGSYA QVDQSLQQIA SIIPPRVDGS LTQPPQLELV 120 GHRIGCAPNL YADPYYGGMM TPFGQPMVPP NVLDMHHARM PLPHEMAQEP VYVNAKQYHG 180 ILRRRESRAK AELEKKLIKV RKPYLHESRH QHALKRARAS GGRFARKSDA DTSKGTSSGS 240 AVSSQSRCTS GSEPLPSSTA DVREKHNDGS LTERQHSYSN GNGYGKQNSF HESKYQPQST 300 HFGEGGSAIK QW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-19 | 168 | 242 | 2 | 76 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366543.1 | 1e-176 | PREDICTED: nuclear transcription factor Y subunit A-1-like | ||||
TrEMBL | M1AQ62 | 1e-175 | M1AQ62_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400027785 | 1e-176 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3111 | 22 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 1e-53 | nuclear factor Y, subunit A1 |