PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf08306g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | LBD | ||||||||
Protein Properties | Length: 154aa MW: 16680 Da PI: 7.0112 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 84.2 | 1.9e-26 | 35 | 122 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h+ +lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+ Peinf101Scf08306g00019.1 35 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHR------------ELPEYQRADAVSSMVYEANARLRDPVYGSAGAICQLQK 107 7*******************************997............89************************************ PP DUF260 86 qleqlkaelallkee 100 q+++l+a+la++++e Peinf101Scf08306g00019.1 108 QVNELQAQLAKTQAE 122 ***********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.038 | 34 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-25 | 35 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MESSGTTVST TTSPSLCSVS SSRNSPSPPL VVATPCAACK ILRRRCAEKC VLAPYFPPND 60 PIKFTTAHRE LPEYQRADAV SSMVYEANAR LRDPVYGSAG AICQLQKQVN ELQAQLAKTQ 120 AELVNIQCQQ ANIMALVYME MGQSPPTSPE QSLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-32 | 33 | 130 | 9 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-32 | 33 | 130 | 9 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015079078.1 | 2e-85 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 3e-53 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 4e-53 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | M1AC13 | 8e-82 | M1AC13_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400019410 | 1e-82 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-53 | LOB domain-containing protein 1 |