 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Peinf101Scf08153g00004.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
| Family |
C2H2 |
| Protein Properties |
Length: 252aa MW: 29269.3 Da PI: 7.7911 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peinf101Scf08153g00004.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.5 | 0.0001 | 14 | 37 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH..T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23
kC+ C + F+ k++L+ H++ H
Peinf101Scf08153g00004.1 14 KCSACYRQFNKKEHLVEHMKIsyH 37
7******************97666 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MDHRYESSET LRNKCSACYR QFNKKEHLVE HMKISYHSVH EPMCGICRKH CRSFESLREH 60
LIGPLPKAEC ERIFKDRGCD ICLTILASRN ALRAHRESCQ SRPNNGLHYR MANLGIQDEL 120
RIDNSRGRVV ALACKMVGGG SDGSLDLCAR SFFAMENLYG KSVLKEEGLG FLYDIQIGVQ 180
DPYEDCVATM KLYMRMKAQF HKKENYPLAT DPQNKNNFAS WRQNELERMS PEQLLDFSRS 240
DYYCWCLDTQ DN
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215357 | 1e-69 | AC215357.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0016A12, complete sequence. |
| GenBank | AC215415 | 1e-69 | AC215415.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0190P16, complete sequence. |
| GenBank | AC215430 | 1e-69 | AC215430.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0236E02, complete sequence. |
| GenBank | HG975441 | 1e-69 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
| GenBank | HG975514 | 1e-69 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
