PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf07127g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 106aa MW: 12034.1 Da PI: 7.9465 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 37.5 | 6.7e-12 | 5 | 66 | 32 | 93 |
DUF260 32 nvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 + lFG+sn+lk+lk++p+ ++++am++l+ eA+++++dPv + + ++ + + +++ Peinf101Scf07127g00008.1 5 MPINLFGVSNILKVLKNIPPCQKDNAMKALMLEANICVDDPVDKLITIRQNCNMYRDIFRVQ 66 56689*************************************98887777666555555444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.664 | 1 | 74 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-9 | 7 | 56 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 106 aa Download sequence Send to blast |
MIFLMPINLF GVSNILKVLK NIPPCQKDNA MKALMLEANI CVDDPVDKLI TIRQNCNMYR 60 DIFRVQAVDL QEQQNNISAT TASIRRNNCS ILSFDMLPLH GLHGFN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607074.1 | 3e-28 | PREDICTED: LOB domain-containing protein 7-like | ||||
Refseq | XP_016443041.1 | 3e-28 | PREDICTED: LOB domain-containing protein 7-like, partial | ||||
TrEMBL | A0A1S3XSW6 | 6e-27 | A0A1S3XSW6_TOBAC; LOB domain-containing protein 7-like | ||||
STRING | XP_009607074.1 | 1e-27 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14294 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-08 | LOB domain-containing protein 22 |