PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf06583g00015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 898aa    MW: 100953 Da    PI: 5.5575
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf06583g00015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS364.61.4e-1115128781368
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lL++cA+ v+++d + a++ L+++++++sp+gd+ qRla++f+ +L+arla+++++ly+al+p++ +    +e+l+a++++ 
  Peinf101Scf06583g00015.1 512 LRTLLISCAQSVAADDRRTANEQLKQIRQHSSPTGDAYQRLASVFADGLEARLAGTGTQLYAALAPKRIT---AAEKLKAYQAYL 593
                               6789***************************************************************999...9*********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                 +P+ k++ + aN++I   +++ +++H+iDf+i++G+QWp L+q L++ p+gpp+lRiTg++ p++g   +e+le+tg+rLak+
  Peinf101Scf06583g00015.1 594 SSCPFKKIAIFFANKMIFHTASNGRTLHVIDFGIQYGFQWPILIQLLSQIPGGPPKLRITGIDLPQPGfrPAESLEKTGSRLAKY 678
                               *******************************************************************9***************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               +e++ vpfe+n+++a+++e++++e+L++ +gE++aVn+ ++ ++llde+v ++s+rd+vL+l+++++P+++v +  + +++s+ F
  Peinf101Scf06583g00015.1 679 CERFSVPFEYNAIAAQNWESIRIEDLKLASGECVAVNCLFRFKNLLDETVVVDSPRDAVLRLIRKMNPDIFVQAVINGSYSSPFF 763
                               ************************************************************************************* PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               ++rf eal yys+lfd+++a+l+r++++r   E+e+ +re++nv+aceg+er+er et+++W+ r ++aGFk +pl+++ +++ +
  Peinf101Scf06583g00015.1 764 VTRFREALFYYSTLFDMFDATLSRDDQQRFHFEQEFYKREAMNVIACEGSERVERPETYKQWQVRNMRAGFKLLPLNQQLMQKLR 848
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLv 368
                               + ++  +++ +  +e+ g++++gWk+r+Lv
  Peinf101Scf06583g00015.1 849 CKVKDGYKKDFVFDEDGGWMLQGWKGRNLV 878
                               *******999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.38486864IPR005202Transcription factor GRAS
PfamPF035144.8E-109512878IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MDPRFIPLPD QVDTFADLIN LSSFEESLNH PLSNKDDYVA FGVPYNTSSP DISNFALSSN  60
VSSEVDSPDD HDSDSLFKYL NQILMEENIE DKPSMFHDPL ALKAAEKSFY EALGKTYPPS  120
PFRTPDNVEH QLESPDSIFW NSTEHSTSSS NTGSNSTDHQ SIIDPGESRF PMWSHPSENP  180
IKPLLYSNSE RSHGSLNNFN NSNSHMDSSV NPNVVPNHST SSSNTGSNST DHQSIIDPGE  240
SRLPMWSHPS ENSIKPLLHS NSERSHGSLN NFNNSNSHMD SSVNPNVVPN VFTDSESILQ  300
FKRGMEEASK FLPNLSQFVI DLDKYTFPPK MEEVTKEAVV KVEKDEKNHS PNGTKGRKHQ  360
YPEDSDYEDE RNNKQSAIYV EEEVELSEMF DKVLLCTDKG ETLCGGDVKL EMSSEVDKSS  420
VQNGLAHGSN GGKNRAKKQG TKNEAEEVEL SEMFDKVLLC TDKGETFCGG DVKLEMSSEV  480
EKSSVQNGLA HGSNGGKNRA KKQGTKNEAV DLRTLLISCA QSVAADDRRT ANEQLKQIRQ  540
HSSPTGDAYQ RLASVFADGL EARLAGTGTQ LYAALAPKRI TAAEKLKAYQ AYLSSCPFKK  600
IAIFFANKMI FHTASNGRTL HVIDFGIQYG FQWPILIQLL SQIPGGPPKL RITGIDLPQP  660
GFRPAESLEK TGSRLAKYCE RFSVPFEYNA IAAQNWESIR IEDLKLASGE CVAVNCLFRF  720
KNLLDETVVV DSPRDAVLRL IRKMNPDIFV QAVINGSYSS PFFVTRFREA LFYYSTLFDM  780
FDATLSRDDQ QRFHFEQEFY KREAMNVIAC EGSERVERPE TYKQWQVRNM RAGFKLLPLN  840
QQLMQKLRCK VKDGYKKDFV FDEDGGWMLQ GWKGRNLVGA YFELYIHYNL SNRLKLPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-454958801374Protein SCARECROW
5b3h_D7e-454958801374Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606498.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1S4BAP20.0A0A1S4BAP2_TOBAC; scarecrow-like protein 14
STRINGXP_009606498.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]