PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf06583g00003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 921aa    MW: 101368 Da    PI: 9.5184
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf06583g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.2e-07822871147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Peinf101Scf06583g00003.1 822 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 871
                               6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.83E-7422505IPR029071Ubiquitin-related domain
CDDcd017696.15E-4429491No hitNo description
PROSITE profilePS512949.826608659IPR017930Myb domain
SuperFamilySSF466897.8E-9610657IPR009057Homeodomain-like
SMARTSM007171.2612665IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-6613656IPR009057Homeodomain-like
CDDcd116606.69E-12614657No hitNo description
PROSITE profilePS5129415.876817876IPR017930Myb domain
SMARTSM007172.0E-7821874IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-10822872IPR009057Homeodomain-like
SuperFamilySSF466891.72E-15823904IPR009057Homeodomain-like
CDDcd116603.22E-17823873No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPHIP RATRSARRRG IIRRKADGNG TCPFDLLATV AGKLLGDGES  60
SPDSASPART KEQCAIVKDE KVKEDEDRSL KEKTYADGCY ERGFFISELV SQAPVVNHCS  120
SELPHTQNDT CSGPASGIMS SDCSEKFLFA KQFVNEDSRD EHGNFSSKTE PEASGCGASC  180
TLDTESDKHI KIELSNNAKV PYKGAAVYSS QFPDLWDSKP SPLVTLDDSV RLSLSTYNAP  240
CRSLPVIRND VKLATRDDDE NSGCTQPSTP NKASGSAPRM RDRPIKKLLA SKYWEENLKS  300
DDEGHANSGK CLLLCSPSYS FALGFDIKRI FPDGETTHAY QNRSIGYKHQ RSQRDFPFKK  360
RKLFKCSMFS NSDGETSTDG KCSSPTNDFH GNASGNSKAS SGGRAAAGTS VFNGGRASFR  420
PRDSHVKFRI KSFRVPELFV EIPENATVGS LKALTSILGG GLRIGVVFQG KKVRDDNKTL  480
LQTGISHDYK LDALGFSLEP NPIQASPPLG PDCRSCILPC DTPHPLTRCP SPATVVHTGI  540
RQGRSDDHTG TNLSNFVESD RDSAQSRPYT ALEKISANSR ALVPVTAVNA PEALSVVPLR  600
KPKRSEATQR RIRRPFSVAE VEALVQAVEK LGTGRWRDVK LRAFDNAKHR TYVDLKRTVM  660
EAVTSILGGG LRIGVVFQGK KVRDDNKTLL QTGISHDYKL DALGFSLEPN PIQASPPLGP  720
DCRSCILPCD TPHPLTRCPS PATVVHTGIR QGRSDDHTGT NLSNFVESDR DSAQSRPYTA  780
LEKISANSRA LVPVTAVNAP EALSVVPLRK PKRSEATQRR IRRPFSVAEV EALVQAVEKL  840
GTGRWRDVKL RAFDNAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLTAHA  900
YWSQQQAKQQ MKQPSETYLL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-556009124107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352361QRDFPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577769.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
SwissprotQ6R0E31e-101TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A1U8HBI40.0A0A1U8HBI4_CAPAN; telomere repeat-binding protein 5-like isoform X2
STRINGPGSC0003DMT4000779690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.16e-90TRF-like 2