PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf06428g00012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

SRS

Protein Properties

Length: 460aa MW: 48325.6 Da PI: 7.3599

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf06428g00012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.5	1.5e-67	251	413	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsal 86 +++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq + + + aa s+ +++++k++r +s++++++ Peinf101Scf06428g00012.1 251 SSTTCQDCGNQAKKDCPHKRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLMGTGTDVVAAGSSsqSTSSAKKPRLVNSQATTTA 335 5689*******************************************9988777666555443477888999999999* PP DUF702 87 sstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s+t++s+++++++++tss lP +v+++avf+cvrv+svddge+e+aYq++v igGhvfkG+LydqGlee Peinf101Scf06428g00012.1 336 SHTSTSNTTPQRSFDTSSshqdasfkasLPGQVKAPAVFKCVRVTSVDDGEDEYAYQAVVRIGGHVFKGFLYDQGLEE 413 ************999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.4E-62	252	412	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-26	254	296	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.3E-29	364	411	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
VQLNELSEKV LQHDKKVHCA GHYHRTVDEV VSLLAFLSQS WRLLQGSDSG TAFADWVTSS 60 NSSAAAGIGD LSLGFTTAGG GNGSTTGGGG NGGGHSGLWS ASPSNNTTRQ MQINYGLPHE 120 MGMFVVTPAS FHHHHQENSI NFDNLHHHHQ SLNGSNISTS PTTNTSLGVG VGVGVIPLLT 180 ATPLTNMVSF DDHQDLVSRN RGGTNDHSGG SGFQFFSNQQ QNSPNYNKTS NIPSNFTSGG 240 GNIGGGSISS SSTTCQDCGN QAKKDCPHKR CRTCCKSRGF DCTTHVKSTW VPAARRRERQ 300 LMGTGTDVVA AGSSSQSTSS AKKPRLVNSQ ATTTASHTST SNTTPQRSFD TSSSHQDASF 360 KASLPGQVKA PAVFKCVRVT SVDDGEDEYA YQAVVRIGGH VFKGFLYDQG LEEGNKDNNN 420 FPNLSDLHLG GGNGNDPSDL YAASTGGGLL GGSNYGNPIN

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

VQLNELSEKV LQHDKKVHCA GHYHRTVDEV VSLLAFLSQS WRLLQGSDSG TAFADWVTSS  60
NSSAAAGIGD LSLGFTTAGG GNGSTTGGGG NGGGHSGLWS ASPSNNTTRQ MQINYGLPHE  120
MGMFVVTPAS FHHHHQENSI NFDNLHHHHQ SLNGSNISTS PTTNTSLGVG VGVGVIPLLT  180
ATPLTNMVSF DDHQDLVSRN RGGTNDHSGG SGFQFFSNQQ QNSPNYNKTS NIPSNFTSGG  240
GNIGGGSISS SSTTCQDCGN QAKKDCPHKR CRTCCKSRGF DCTTHVKSTW VPAARRRERQ  300
LMGTGTDVVA AGSSSQSTSS AKKPRLVNSQ ATTTASHTST SNTTPQRSFD TSSSHQDASF  360
KASLPGQVKA PAVFKCVRVT SVDDGEDEYA YQAVVRIGGH VFKGFLYDQG LEEGNKDNNN  420
FPNLSDLHLG GGNGNDPSDL YAASTGGGLL GGSNYGNPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009796421.1	1e-162	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_016458851.1	1e-162	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	4e-74	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2G2VN60	1e-170	A0A2G2VN60_CAPBA; Protein LATERAL ROOT PRIMORDIUM 1
STRING	XP_009604000.1	1e-178	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	5e-68	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]