PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf05858g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28198.1 Da PI: 6.2536 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.2 | 3.3e-14 | 90 | 137 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + kKl+K++iL+ ++eY+k+Lq Peinf101Scf05858g00011.1 90 QDHVAAERNRREKMSQLFISLSKIVPGL-----KKLDKSSILRDTIEYMKELQ 137 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.815 | 87 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.9E-12 | 90 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-17 | 91 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-17 | 92 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.16E-12 | 92 | 141 | No hit | No description |
SMART | SM00353 | 7.6E-15 | 93 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MAYTGFNQED LKQNLSYTIE EKAQKAISCS PLISSSGLLI SFGSSSLNPA VISEEDDIAS 60 MIKYSHLEES AYQESGGNNI IYKRTPLQAQ DHVAAERNRR EKMSQLFISL SKIVPGLKKL 120 DKSSILRDTI EYMKELQEQV KVLEETKKNI PSAWENNDSS SSKENVNCSN QVVGSNIKAR 180 ISNKSVLINI HCNKEDGMVE RVLSQMEQLH LAVHDIRIMP FGLTNLDISI LAEVNSSNLQ 240 LEINVCKSHL KL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009768662.1 | 3e-89 | PREDICTED: transcription factor bHLH18-like | ||||
Refseq | XP_016472308.1 | 3e-89 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | A0A1S4A6N7 | 8e-88 | A0A1S4A6N7_TOBAC; transcription factor bHLH18-like | ||||
TrEMBL | A0A1U7VKZ0 | 8e-88 | A0A1U7VKZ0_NICSY; transcription factor bHLH18-like | ||||
STRING | XP_009768662.1 | 1e-88 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8864 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22760.1 | 3e-30 | bHLH family protein |