PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf05729g00012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

G2-like

Protein Properties

Length: 272aa MW: 30569.5 Da PI: 7.7253

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf05729g00012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104	9e-33	31	85	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHe+Fv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Peinf101Scf05729g00012.1 31 KPRLRWTADLHEHFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 85 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.637	28	88	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-31	28	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-23	31	86	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.66E-16	31	88	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-8	33	84	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-21	131	176	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MYNASELGGG SGFMYENGNG EGGIVMTRDP KPRLRWTADL HEHFVDAVTK LGGPDKATPK 60 SVLRLMGLKG LTLYHLKSHL QKYRLGQQAK KQNAVDQNKE NSGDSSGQFC LHSSGPSTSS 120 LNMNYMQGEV PISEAVMCQI EVQKRLQEQL EVQQKLQMRI EAQGKYLQAM LEKAQKNIPV 180 SMNSPSALEA TRALHFNLPL SNITDHMHGD NRDENIMGKR IYDNTNEELP RSDFFKEEDR 240 KRDMNLKLKE ASITFDLNSR SSYDFVGSNA AL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	31	84	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	31	84	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	31	84	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	31	84	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019247845.1	1e-146	PREDICTED: myb family transcription factor PHL11 isoform X1
Swissprot	C0SVS4	6e-72	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A1J6ID59	1e-145	A0A1J6ID59_NICAT; Myb family transcription factor phl11
STRING	XP_009769428.1	1e-134	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	7e-60	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]