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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf05677g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ARF | ||||||||
Protein Properties | Length: 696aa MW: 77065.8 Da PI: 7.3399 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.4e-24 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD Peinf101Scf05677g00004.1 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGD 206 89****************************986445444..8999**************************************** PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 ++vF +++++ l+v+++r+ Peinf101Scf05677g00004.1 207 SIVFL--RSENGDLCVGIRRA 225 *****..4478889****996 PP | |||||||
2 | Auxin_resp | 114 | 1.4e-37 | 292 | 375 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eFvvk+++v++a++v++s GmRfkm fetedss++++ +Gt+++v+ dp++WpnS+Wr+L+ Peinf101Scf05677g00004.1 292 AAKFAASGQPFEVVYYPRASTPEFVVKASSVRSAMRVQWSSGMRFKMPFETEDSSRISWfMGTISSVHVDDPIHWPNSPWRLLQ 375 678899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-38 | 115 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-29 | 118 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.24E-22 | 123 | 224 | No hit | No description |
Pfam | PF02362 | 3.6E-22 | 124 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.338 | 124 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-22 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.6E-32 | 292 | 375 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.498 | 610 | 690 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MINIMNPVNK PMNEVEKSLE PQLWHACAGG MVQMPPVNSK AFYFPQGHAE HAHKNVDFGG 60 FPKIPPLILC RVSAIRYLAD TDTDEVFAKI RLVPLKGNEC DVEDDVGFLG FDNKNENQEK 120 PNSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTILAKDVH GEVWKFRHIY 180 RGTPRRHLLT TGWSNFVNQK KLVAGDSIVF LRSENGDLCV GIRRAKRGIG CGQEVPSGWN 240 TGPGNYAASL YQGFPGFLSE DEKKFIRNGQ AAKSDDGLRG KSKVRAESVT EAAKFAASGQ 300 PFEVVYYPRA STPEFVVKAS SVRSAMRVQW SSGMRFKMPF ETEDSSRISW FMGTISSVHV 360 DDPIHWPNSP WRLLQVHWDE PDLLQNVKRV SPWLVELVSN MPPIHLSPFS PPRKKLRLLQ 420 PPEFPMVGQL SMPSLLTNPL SPSSPLCCIS DNIPAGIQGA RHAQCGLSSS DLHFNKLQAG 480 LLPFGFKDLQ CAVPPPRVLK GGSFMTNFDN DENISCLLTM GNTTPTSMKR KETQKPMFML 540 FGKPILTEQQ ISLSCSSETV GNSLSNGNPE KMNLSEGSGS AILNNGPPEN NSGEVLPWYK 600 DQKPEFGLET GHCKVFMESE DVGRTLDLSV LGSYEELYKK LADMFGVKTS EMLSNVLYQD 660 FTGAVKHAGD EPFSQFVKMA RRLTILTDSG SDNIGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 3e-70 | 10 | 396 | 10 | 353 | Auxin response factor 1 |
4ldy_B | 3e-70 | 10 | 396 | 10 | 353 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784518.1 | 0.0 | PREDICTED: auxin response factor 16-like | ||||
Refseq | XP_009784519.1 | 0.0 | PREDICTED: auxin response factor 16-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A1U7X118 | 0.0 | A0A1U7X118_NICSY; Auxin response factor | ||||
STRING | XP_009784518.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA592 | 24 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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