PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf05363g00067.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 406aa MW: 45886 Da PI: 6.5124

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf05363g00067.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.8	8e-08	162	209	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a +L + ++Y++sLq Peinf101Scf05363g00067.1 162 SHSLAERVRRGKINEKLRCLQDIVPGC----YKTMGMAGMLDEIINYVQSLQ 209 8***********************8....355999999*****99998 PP
2	HLH	23.8	8e-08	286	333	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a +L + ++Y++sLq Peinf101Scf05363g00067.1 286 SHSLAERVRRGKINEKLRCLQDIVPGC----YKTMGMAGMLDEIINYVQSLQ 333 8***********************8....355999999*****99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.15E-8	156	213	No hit	No description
SuperFamily	SSF47459	1.57E-15	156	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.888	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-15	158	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-5	162	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.7E-8	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-15	280	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-8	280	337	No hit	No description
PROSITE profile	PS50888	14.888	282	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-15	282	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-5	286	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.7E-8	288	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MADHYFSPDM QNFINSPFSL LNIDSNMDFM NQFPELINPC FSDMSSFNLQ SSMEFAQENI 60 FTQVPEFSGS TLQENFPGDL QQDMPIIPVT VRNDINETSK KRKTIDTPES SSAYSSPAVS 120 GTGTKRRNSK GRGNRVKSDE KEEEKPREVV HVRARRGQAT DSHSLAERVR RGKINEKLRC 180 LQDIVPGCYK TMGMAGMLDE IINYVQSLQN QVEFLSMKLT AASSYHDFNS ESDILVLMQR 240 AKAYEALKMQ KMKIEACEVL SSNQAGPYDH SFGCYPLARR GQATDSHSLA ERVRRGKINE 300 KLRCLQDIVP GCYKTMGMAG MLDEIINYVQ SLQNQVEFLS MKLTAASSYH DFNSESDIIV 360 LMQRAKAYEA LKMQKMKIEA CEVLSSNQAG PYDHSFGCYP LLPYNT

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MADHYFSPDM QNFINSPFSL LNIDSNMDFM NQFPELINPC FSDMSSFNLQ SSMEFAQENI  60
FTQVPEFSGS TLQENFPGDL QQDMPIIPVT VRNDINETSK KRKTIDTPES SSAYSSPAVS  120
GTGTKRRNSK GRGNRVKSDE KEEEKPREVV HVRARRGQAT DSHSLAERVR RGKINEKLRC  180
LQDIVPGCYK TMGMAGMLDE IINYVQSLQN QVEFLSMKLT AASSYHDFNS ESDILVLMQR  240
AKAYEALKMQ KMKIEACEVL SSNQAGPYDH SFGCYPLARR GQATDSHSLA ERVRRGKINE  300
KLRCLQDIVP GCYKTMGMAG MLDEIINYVQ SLQNQVEFLS MKLTAASSYH DFNSESDIIV  360
LMQRAKAYEA LKMQKMKIEA CEVLSSNQAG PYDHSFGCYP LLPYNT

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567559.1	1e-147	PREDICTED: transcription factor BEE 3-like
Swissprot	Q8GWK7	2e-58	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A1U8GHI6	1e-146	A0A1U8GHI6_CAPAN; transcription factor BEE 3-like
STRING	XP_009777020.1	1e-143	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3971	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	8e-59	BR enhanced expression 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]