PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf05124g00006.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 536aa    MW: 60332 Da    PI: 5.5858
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf05124g00006.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding248.7e-08378427147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHH.HHT..TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar.tmg..kgRtlkqcksrwqky 47 
                               r+ W+t E ++lv++v ++G g+W+ I + ++g   +R++ ++k++w+++
  Peinf101Scf05124g00006.1 378 RNCWSTPEVLKLVEGVSKYGVGRWHGIKSvYFGssVHRSPTNLKDKWRNL 427
                               789************************762566***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-10373435IPR009057Homeodomain-like
PROSITE profilePS5129414.655373432IPR017930Myb domain
SMARTSM007171.3E-8377430IPR001005SANT/Myb domain
PfamPF002495.6E-6378427IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-13380438IPR009057Homeodomain-like
CDDcd116602.62E-15381429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MLSSAQLSTA EIYHSEAAIL KTPNASAMIF QHEPDQVIGA ASVYFASEEE AIGVEYLLAE  60
PEHDGVIDTL LDRNTCTFSV PKSYYLTEFS SKEPALTECD HGARQGSLTE EDKTRERFLD  120
GLSNGCDENY CCISCEDYLL DIELEEETPT LNDVTKDISC IGDGYLEDQL ADLDGRNYGT  180
DVLKLSDAST SCDHDALPFD DVSTDKLLKV FRKMSGWQIQ DMRDQNFNFP KCSPESSESE  240
GDKVPPASYQ NLLTASTAFP SVFNFRRMPR VQHVKRGEHI RWSFYKCLSS AAGETQFDCP  300
DKWDSKTEPA PVEDRLIRSK GHLSEDHRVN RAVDSNIHPA EAQVDPSGSL LDQSSDSTSE  360
DDWTIGTETH RCDRKRKRNC WSTPEVLKLV EGVSKYGVGR WHGIKSVYFG SSVHRSPTNL  420
KDKWRNLVKA SCRRSHKQRG VDAKPKRGQP SIPHHVLNRV RELAVIHPHS KLHRARVLPT  480
VFVASSSGVE SDNRNIFVDR ALRKGLEQAD LHHLEIEIDS KEQDDQSESA GEKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548737.10.0PREDICTED: uncharacterized protein LOC107848477 isoform X3
TrEMBLA0A1U8ENF20.0A0A1U8ENF2_CAPAN; uncharacterized protein LOC107848477 isoform X3
TrEMBLA0A2G2YHM70.0A0A2G2YHM7_CAPAN; Uncharacterized protein
STRINGXP_009619992.11e-168(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134241214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-20TRF-like 6