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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf04950g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | Dof | ||||||||
Protein Properties | Length: 257aa MW: 28240.1 Da PI: 9.9835 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.9 | 1.1e-38 | 14 | 73 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprC+stntkfCyynny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+s Peinf101Scf04950g00002.1 14 EAGLKCPRCNSTNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNNKRS 73 6779***************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-32 | 1 | 66 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-32 | 16 | 71 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.823 | 17 | 71 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 19 | 55 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MVDRARMQKI PLPEAGLKCP RCNSTNTKFC YYNNYNLSQP RHFCKSCRRY WTRGGALRNV 60 PVGGGCRRNN KRSKSSINNN NNNSSTSKAA GGVQLLGNSI NTSTSASPTR CTMENITNGH 120 QFSQPSTQFT PLMAAFQNFN NYGGFQTPHQ LVHATSNSNG GLSEMGFHNS NNLLPSLAAN 180 FEHTTNLYPF QGDQGTTIEA SNGVNSQVKM EDNRQGMNLN STKQFLGTLE NNQYWSGANS 240 WTGFSGLNNS STTSHLL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019235411.1 | 6e-98 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
TrEMBL | A0A2G2VP28 | 1e-98 | A0A2G2VP28_CAPBA; Dof zinc finger protein DOF2.4 | ||||
STRING | XP_009777580.1 | 3e-94 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 2e-38 | DNA binding with one finger 2.4 |