![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf04560g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 164aa MW: 18689.2 Da PI: 4.124 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg+W++ Ed++l++++ ++G ++W+ ++ Peinf101Scf04560g00016.1 14 RGPWSKKEDDILINYIDKHGHPNWRQLPKL 43 89**********************998876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-11 | 5 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.35E-7 | 9 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.876 | 9 | 42 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 2.8E-6 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.76E-4 | 16 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence Send to blast |
MGRTPCCEKL GLNRGPWSKK EDDILINYID KHGHPNWRQL PKLAEKSEMS SPKPNSNNQH 60 EPNCSSSSIT SSSEGSCSNT TATGSHVDES RDQMNLDNLL EVDDNFWSEV LWATPADDSK 120 DYNPDFSLSS QEENYELNSN LNDNWLWDDL FSRANEFLLE FPDL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770485.1 | 4e-38 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1U7W8B2 | 8e-37 | A0A1U7W8B2_NICSY; myb-related protein Myb4-like | ||||
STRING | XP_009770485.1 | 1e-37 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17103 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G06180.1 | 5e-21 | myb domain protein 13 |