PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf04403g03081.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 557aa    MW: 60554 Da    PI: 8.1506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf04403g03081.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12261309255
                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               r +h++ E+rRR++iN++ + Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  Peinf101Scf04403g03081.1 261 RSKHSATEQRRRSKINDR-HMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 309
                               889***************.89*******9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.4E-20256329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14257325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.976259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9261309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.79E-12261313No hitNo description
SMARTSM003538.8E-9265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MELPQPRAFG TEGMKTTHDF LSLYSPVEQD PRPPQGGYLK THNFLQPLEQ AEKTFGKEET  60
KVEVATIEKP PPPVGPPSVE HILPGGIGTY SISYLHQKVP KPETSLIAVA AQTSSTDRND  120
ENSNCSSYTT GSGFTLWGES AVKKGKTGKE NLGGDRHVLG GLNTGVGQPT TSLEWQSQSS  180
SNHKQNTAAL SSISSAQQSS PLKNQSFLHM LTSAKKAHED DDDDDEDFVV KKEPLSQSHP  240
RGNLSVKVDA KGNDQKPNTP RSKHSATEQR RRSKINDRHM LRGIIPNSDQ KRDKASFLLE  300
VIEYIHFLQE KVHKYEDSYQ GWDNETSKLP WSKSHRTTQG VSEHLQGTTN ASGAALLYAG  360
KFDENIIGIC STDPINGQQV EPNISTTSLK QVSQQPGLTN KAATVSMHPK TFSFCGTSST  420
AALYSSKLKA DTDKSESKSH SQFSLSRSQT PDYAIPNANP KSQELSIEGG TISISSVYSQ  480
GLLNTLTQAL QNSGVDLSQA SVSVQIDLGK RANGRPNSSA STVKGEEVST SNQPIPKSIV  540
TSTRDESHHA FKRLKTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488747.10.0PREDICTED: transcription factor BIM1-like isoform X2
TrEMBLA0A1S4BIR80.0A0A1S4BIR8_TOBAC; transcription factor BIM1-like isoform X2
STRINGXP_009611733.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-98bHLH family protein