![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf04356g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 820aa MW: 91692.9 Da PI: 6.6325 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.9 | 9.2e-24 | 118 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD Peinf101Scf04356g00022.1 118 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDA 201 99*****************************7333.34459******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 ++F + +++el+v+v+r+ Peinf101Scf04356g00022.1 202 FIFL--RGENGELRVGVRRA 219 ****..449999*****996 PP | |||||||
2 | Auxin_resp | 121.1 | 8.6e-40 | 244 | 326 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tk++F+v+Y+Pr+s++eF+v+++++++++k++ s+GmRfkm+fe+e+++e+r++Gt+vgv+d+dp rWp+SkWr Lk Peinf101Scf04356g00022.1 244 AWHAIQTKTMFTVYYKPRTSPAEFIVPYDQYMESVKNNHSIGMRFKMRFEGEEAPEQRYTGTIVGVEDADPKRWPKSKWRYLK 326 89******************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-40 | 114 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-41 | 115 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.21E-22 | 116 | 218 | No hit | No description |
Pfam | PF02362 | 1.1E-21 | 118 | 219 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.012 | 118 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-23 | 118 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.3E-37 | 244 | 326 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.8E-11 | 691 | 781 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.19E-12 | 692 | 771 | No hit | No description |
PROSITE profile | PS51745 | 24.792 | 694 | 778 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 820 aa Download sequence Send to blast |
MATSDIDAEK ALYTELWRAC AGPLVTVPQE GELVFYFPQG HIEQVEASTN QASDQQMPVY 60 NLPAKILCRV MNVLLKAEPD TDEVYAQVTL MPEPNQDENA VPKEPTPPPP PRFHVHSFCK 120 TLTASDTSTH GGFSVLRRHA DECLPPLDMS RQPPTQELVA KDLHGNEWRF RHIFRGQPRR 180 HLLQSGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRAM RQQGNAPSSV ISSHSMHLGV 240 LATAWHAIQT KTMFTVYYKP RTSPAEFIVP YDQYMESVKN NHSIGMRFKM RFEGEEAPEQ 300 RYTGTIVGVE DADPKRWPKS KWRYLKVRWD ETSAIPRPDR VSPWKIEPAL SHPALNPLPI 360 PRPKRPRSNV LPSSPDSSVL TREGSSKITA GPSQASGFSR VLQGQEVSTL RGSFVENNES 420 DSSQKPIVWP PSLDDEKSDV HSASKRYQSD NWLPLGRHES SFKDLLSGFG VQGNSSHGLH 480 LASDDQTAFP ASLVTRQALD NEKDFSLLGK KWSLASSGLS LNLMDSGLKG ADTPYQMRGT 540 ARCNGFNEYQ TLPGHRIDHQ QGNWLRPQFV LPYYQMSTHS GEMMPKPMAS LRHEAMKPKE 600 GNCKLFGIPL GSNSAVVDPV MLQKVSSIDS ASNMHFGVHP HQFPTTESDQ KSEQLKGSKI 660 LDDGLTVNDQ EKQFQTSHLG TTDREGKGHI NSTRSCTKVH KQGTALGRSV DLAKFNNYEE 720 LIAELDHLFD FDGELKSRNK NWLVVYTDDE GDMMLVGDDP WQEFCGMVRK IFIYTKEEVQ 780 QMNPGTLNSN GEDNSSIGEG SDAKELKNVQ LPSESSPEDS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-174 | 11 | 352 | 18 | 358 | Auxin response factor 1 |
4ldw_A | 1e-174 | 11 | 352 | 18 | 358 | Auxin response factor 1 |
4ldw_B | 1e-174 | 11 | 352 | 18 | 358 | Auxin response factor 1 |
4ldx_A | 1e-174 | 11 | 352 | 18 | 358 | Auxin response factor 1 |
4ldx_B | 1e-174 | 11 | 352 | 18 | 358 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255|RuleBase:RU004561, ECO:0000269|PubMed:26716451, ECO:0000269|PubMed:26959229}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
![]() |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269|PubMed:26716451}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM143940 | 0.0 | HM143940.1 Solanum lycopersicum auxin response factor 11-like (ARF11) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016466716.1 | 0.0 | PREDICTED: auxin response factor 2-like isoform X1 | ||||
Swissprot | K4DF01 | 0.0 | ARF2B_SOLLC; Auxin response factor 2B | ||||
TrEMBL | A0A1S3ZQQ9 | 0.0 | A0A1S3ZQQ9_TOBAC; Auxin response factor | ||||
STRING | XP_009592683.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2618 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|