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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Peinf101Scf04311g00030.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
| Family |
NAC |
| Protein Properties |
Length: 351aa MW: 41083.5 Da PI: 7.1708 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peinf101Scf04311g00030.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 58.7 | 2e-18 | 7 | 53 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
+ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL+
Peinf101Scf04311g00030.1 7 VPPGFRFHPTDEELVDYYLRKKVTSRRIDL-DVIKDVDLYKIEPWDLQ 53
69****************************.9***************7 PP
|
| 2 | NAM | 141.7 | 4.3e-44 | 55 | 163 | 17 | 129 |
NAM 17 eyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
+yL+kkv++++++l +vik+vd+yk+ePwdL+ ++e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s k+ l+g
Peinf101Scf04311g00030.1 55 YYLRKKVTSRRIDL-DVIKDVDLYKIEPWDLQ--GTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKGIYS-KHDLIG 135
8*************.9***************8..345789**************************************.8899** PP
NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
++ktLvfykgrap+g+k+dW+mheyrle
Peinf101Scf04311g00030.1 136 MRKTLVFYKGRAPNGQKSDWIMHEYRLE 163
**************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVT SRRIDLDVIK DVDLYKIEPW DLQDYYLRKK 60
VTSRRIDLDV IKDVDLYKIE PWDLQGTEEQ NEWYFFSHKD KKYPTGTRTN RATAAGFWKA 120
TGRDKGIYSK HDLIGMRKTL VFYKGRAPNG QKSDWIMHEY RLETDPNGAP QAKGWVVCRV 180
FKKKIATMRK ESEHESPIWY DDHVSFMPEI DSPKQHSHSS LTYHYPNYPC KKELDNLHYQ 240
IPPDHHHQQQ QXSLPQSSVL TREHVHPMYG NNNNSTNSTN EQLADQVTDW RVLDKFVASQ 300
LSQEEVISKE NDYSNAANTL HGHGNTNLNK QETATENTST ASSCSQIDLW K
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-44 | 7 | 184 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-44 | 7 | 184 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-44 | 7 | 184 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-44 | 7 | 184 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 5e-44 | 7 | 184 | 17 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 5e-44 | 7 | 184 | 17 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975515 | 2e-94 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
