PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf04194g00019.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

C3H

Protein Properties

Length: 322aa MW: 35550.6 Da PI: 8.989

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf04194g00019.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.8e-11	2	26	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC+f+ r+G+Ck+G++CkF H++ Peinf101Scf04194g00019.1 2 EPLCHFYTRYGICKFGPNCKFDHPM 26 79*********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.408	1	27	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0011	1	26	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-9	2	26	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.6E-4	4	24	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-5	4	26	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF51126	1.04E-52	125	322	IPR011050	Pectin lyase fold/virulence factor
Gene3D	G3DSA:2.160.20.10	7.8E-58	127	322	IPR012334	Pectin lyase fold
Pfam	PF00295	5.3E-15	227	322	IPR000743	Glycoside hydrolase, family 28

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004650	Molecular Function	polygalacturonase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
GEPLCHFYTR YGICKFGPNC KFDHPMGIFT YSISTSSSTD SPAIRHLLGS SSGTNALNLA 60 REGINFNRII KKPSWVTLLL LFTAIALFGL QMNKNLLPPF EFNSVVGSTS GSSSSCDEEF 120 FKVVESRKVV KSITEFGGIG DGKTSNTEAF QRAMQFMAGF TDSGGSQLVV PKGRWLTGSF 180 NLTSNFTLFL AHGAVILGSQ DPKEWPIIDA LPSYGRGRER LGARHISLIH GNGLTNVVIT 240 GENGTVDGQG KMWWDLWWNR TLVHTRGHLV ELINSQNILI HNLTFRNSPF WTIHPVYCRN 300 IVIRNMTILA PLNAPNTDGI DP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3jur_A	3e-19	132	322	29	243	Exo-poly-alpha-D-galacturonosidase
3jur_B	3e-19	132	322	29	243	Exo-poly-alpha-D-galacturonosidase
3jur_C	3e-19	132	322	29	243	Exo-poly-alpha-D-galacturonosidase
3jur_D	3e-19	132	322	29	243	Exo-poly-alpha-D-galacturonosidase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-64	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613774.1	1e-147	PREDICTED: probable polygalacturonase
Refseq	XP_009613775.1	1e-147	PREDICTED: probable polygalacturonase
Refseq	XP_016513231.1	1e-147	PREDICTED: probable polygalacturonase
Refseq	XP_016513232.1	1e-147	PREDICTED: probable polygalacturonase
Refseq	XP_018629866.1	1e-147	PREDICTED: probable polygalacturonase
Swissprot	A7PZL3	5e-73	PGLR_VITVI; Probable polygalacturonase
TrEMBL	A0A1S4DIP2	1e-145	A0A1S4DIP2_TOBAC; probable polygalacturonase
STRING	XP_009613774.1	1e-146	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	2e-12	zinc finger protein 1

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]