![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf04166g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 989aa MW: 111675 Da PI: 5.5193 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 264.5 | 3.6e-81 | 86 | 454 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalkl... 83 lLl Ae+++ +++ +a++lL+ + + ++g+p+qR++ yf+eAL +r++r +++l +++ ++++ s+++++e+l+ ++ Peinf101Scf04166g00018.1 86 LLLVSAEMLAIQQFDRARKLLNVCINCSFSTGNPIQRAVYYFAEALIKRINR-GTGLPSTItaNVNAVSPDDMEEVLMDPRIdvi 169 788899**********************************************.55555555335666667778888888777878 PP GRAS 84 .fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLa 166 ++ P+ k++++t qaIle++++ +r+H iD++i+ G QW L+qaL s+ e p l+iT+vg s ++++e+g+rL+ Peinf101Scf04166g00018.1 170 eTEQMLPFRKVTQFTGIQAILESIKSFRRIHLIDLGIKTGSQWTILMQALVSQGECPLeLLKITAVGT----SLTRIQEIGKRLS 250 899************************************************998555449********....9************ PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 +fAe+l++pf+f++ v+++l +++ +++k gE+la+ + +l + + +l+s +++++ksl P v+vv+e ea +n++ Peinf101Scf04166g00018.1 251 SFAETLNIPFSFRT-VVSDLRNIKKAFFELKAGEVLAIYADSRFWTLIAWPNDLKS----LIQVIKSLDPCVMVVTEIEAYTNAP 330 **************.7999*****************************88888888....************************* PP GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 F +rf eal yysa+fd+le+ ++ ++++r++ ++lg+ i+nv++ eg+e ++rh +l Wr +e++G+++ +ls++ q Peinf101Scf04166g00018.1 331 IFIDRFNEALFYYSAIFDCLETCIGWNHQQRAVAQGVYLGKIIENVITSEGEEMVHRHVKLDCWRTLFEKSGLEETELSHSSLYQ 415 ************************************************************************************* PP GRAS 337 aklllrkvksdgy.rveeesgslvlgWkdrpLvsvSaWr 374 akll ++ +g+ ++e + +sl++ Wk+ p+ s+S+W+ Peinf101Scf04166g00018.1 416 AKLLAERSTCHGFcSLEMDGKSLIIKWKGTPIKSLSVWK 454 *********999637889999999**************8 PP | |||||||
2 | GRAS | 246.4 | 1.1e-75 | 622 | 985 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fse 86 +L + Ae+ +++ +a++ L+ as +g+p+qR++ yf+eAL+ ++ + +++ a ++ + +++++l+ f++ Peinf101Scf04166g00018.1 622 QLHASAEFYVQKQYGKARKWLSLCYPSASVTGNPVQRVVYYFAEALRDKIDK-ETGTTPAEGSKMLKGVDVEDALMLIPSarFQQ 705 678889999999999************************************9.33333333333444444666665555478*** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAe 170 + P+ k++++ qa+l+ v +++r+H iD++i+ Gl +p +++aLa+R+e p l+iT+vg s++++eetg+ L++fAe Peinf101Scf04166g00018.1 706 AVPFSKIAQFPGMQAVLDNVMSAKRIHLIDLGIQSGLPFPIIMNALANRNECPVeLLKITAVGT----SRQRIEETGKMLSSFAE 786 **************************************************7665499*******....9**************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 ++++pf f++ v+ +l+dl+ e++++++gE++aV + ++l ++l+ + +le+ +++++ksl+P v+vv+e ea++n++sF++ Peinf101Scf04166g00018.1 787 QMNIPFLFSM-VVLELKDLRKENIELEEGEVVAVYSEFRLWTMLAWPNHLED----LVRVIKSLKPSVMVVSEVEASTNTPSFMN 866 **********.7999*****************************77777777....***************************** PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 rf ++y+sa fd+l + + +++++r+ E +l++ i++v+ eg++r+ +h + + Wre + ++G + ++s + qa+ll Peinf101Scf04166g00018.1 867 RFDALVSYCSATFDCLGTCMKPDDKHRAIAEGIFLREMIQSVIIVEGEDRI-QHARISFWREFFARFGIVETEFSASSLYQADLL 950 *************************************************66.5778***************************** PP GRAS 341 lrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ ++ ++ ++e + ++l+ Wk+ p+ s+SaW+ Peinf101Scf04166g00018.1 951 IQSTEcWKSCSWEFDGKCLITKWKGTPVNSLSAWK 985 *****9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.822 | 57 | 433 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-78 | 86 | 454 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 35.294 | 593 | 964 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-73 | 622 | 985 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 989 aa Download sequence Send to blast |
MDSHQPKNSY FHEGKKGKVN EMNLDMPSDV SGSPVLSTTT IMNIARDQLF HYTSQNYDAY 60 SIIFSPLISD LGLSPQVTEE VELALLLLVS AEMLAIQQFD RARKLLNVCI NCSFSTGNPI 120 QRAVYYFAEA LIKRINRGTG LPSTITANVN AVSPDDMEEV LMDPRIDVIE TEQMLPFRKV 180 TQFTGIQAIL ESIKSFRRIH LIDLGIKTGS QWTILMQALV SQGECPLELL KITAVGTSLT 240 RIQEIGKRLS SFAETLNIPF SFRTVVSDLR NIKKAFFELK AGEVLAIYAD SRFWTLIAWP 300 NDLKSLIQVI KSLDPCVMVV TEIEAYTNAP IFIDRFNEAL FYYSAIFDCL ETCIGWNHQQ 360 RAVAQGVYLG KIIENVITSE GEEMVHRHVK LDCWRTLFEK SGLEETELSH SSLYQAKLLA 420 ERSTCHGFCS LEMDGKSLII KWKGTPIKSL SVWKFHNIQI EIIVINTLNT KRYLVSHLFG 480 LELILERGES ERVILAIIPK SVKVDMDSFS EDQATKEVND QPLIPDVAEE KMENSCPLSA 540 PILTLLQKFD SHFRHLRAEK LNEKVSDTPC SSIELPSTDE IMKMARAKLV QHMSTNSSIY 600 SIYLIPSGLP PEIADDVELA LQLHASAEFY VQKQYGKARK WLSLCYPSAS VTGNPVQRVV 660 YYFAEALRDK IDKETGTTPA EGSKMLKGVD VEDALMLIPS ARFQQAVPFS KIAQFPGMQA 720 VLDNVMSAKR IHLIDLGIQS GLPFPIIMNA LANRNECPVE LLKITAVGTS RQRIEETGKM 780 LSSFAEQMNI PFLFSMVVLE LKDLRKENIE LEEGEVVAVY SEFRLWTMLA WPNHLEDLVR 840 VIKSLKPSVM VVSEVEASTN TPSFMNRFDA LVSYCSATFD CLGTCMKPDD KHRAIAEGIF 900 LREMIQSVII VEGEDRIQHA RISFWREFFA RFGIVETEFS ASSLYQADLL IQSTECWKSC 960 SWEFDGKCLI TKWKGTPVNS LSAWKFPHD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-37 | 116 | 985 | 20 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358212.1 | 0.0 | PREDICTED: DELLA protein RGL2-like | ||||
TrEMBL | K4AWA3 | 0.0 | K4AWA3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g059960.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8500 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-52 | RGA-like 2 |