PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf04166g00017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 643aa    MW: 72526.1 Da    PI: 6.5069
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf04166g00017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS248.92.1e-761154564344
                      GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalkl 83 
                               lL + Ae +s+++++ a+++L+  ++ as +g+p+qRl+ +f eAL++ + ++++++ +    ++    +     ++e+l     
  Peinf101Scf04166g00017.1 115 LLQASAERFSNQQFKHARKFLSLCNQSASATGTPVQRLVYCFGEALREIIDKETKSITSLPLDRPGGF-ElepidHEEVLL---C 195
                               677889**********************************************8888886543333222.223222333333...1 PP

                      GRAS  84 .......fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeelee 160
                                       ++  P++++++++  qaIl+ v+ e+r+H iDf+i+ G +W+ L+qaLa+R   +   l+iT+vg     sk+++e 
  Peinf101Scf04166g00017.1 196 pkphviaCYQELPFFQVAQFAGIQAILDNVKLERRLHLIDFGIKSGSHWIILMQALANRGdCQLELLKITAVGT----SKQMIED 276
                               233556677888***********************************************9556779********....9****** PP

                      GRAS 161 tgerLakfA.eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                               +g+rL++fA ee++vpf+f++ v++++ +l+ + +++++ Ea+aV   ++l  +l+ + +le     vL+++ksl+P v+vv++ 
  Peinf101Scf04166g00017.1 277 IGQRLSSFAaEEMKVPFSFKA-VVSEMRNLSKDLFEIDSTEAVAVYTDYRLAGMLAWPDHLEA----VLRFIKSLNPCVMVVIDT 356
                               ********7378*********.7999****************************966666665....****************** PP

                      GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                               ea++n+++F+erf eal  y+a+fdsl++ ++++++ r+ vE  +l++ i n++a eg+er+ r+ +le Wr+ ++++G k+ +l
  Peinf101Scf04166g00017.1 357 EANTNAPTFMERFNEALFLYAAVFDSLQTCMGQNNQSRMAVEGLILRKIIHNMIASEGEERIFRNVRLEVWRALFDKFGIKETEL 441
                               ************************************************************************************* PP

                      GRAS 330 sekaakqaklllrkv 344
                               se+   qa+ll ++ 
  Peinf101Scf04166g00017.1 442 SESSLYQAHLLAERA 456
                               **********99876 PP
2GRAS33.75e-11554631125210
                      GRAS 125 WpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf.AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208
                               W +Ll +L        s+ iT+vg     sk+++ee+g+rL++f Ae+++vpf+f++ v++++++l+ + ++++ +E++aV + +
  Peinf101Scf04166g00017.1 554 WKPLLIELIVH----LSFLITAVGT----SKQMVEEIGQRLSSFtAENMKVPFSFKA-VVSDMKNLNKDIFELDANEVVAVYSEY 629
                               55555555542....4678******....9*************97899*********.7999*******************9988 PP

                      GRAS 209 ql 210
                               +l
  Peinf101Scf04166g00017.1 630 HL 631
                               76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.79886466IPR005202Transcription factor GRAS
PfamPF035147.1E-74115456IPR005202Transcription factor GRAS
PfamPF035141.7E-8554631IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MDSSLGKTTN KGKDQIQTSH CTEARKESLC QPLESCKILQ KRCCRGNLKE RHYDIPCNNC  60
SGSHVPSTVS IIEMARAQLL HYTFKKPNCS IASNSLDADC GLSPEASKDL ELAFLLQASA  120
ERFSNQQFKH ARKFLSLCNQ SASATGTPVQ RLVYCFGEAL REIIDKETKS ITSLPLDRPG  180
GFELEPIDHE EVLLCPKPHV IACYQELPFF QVAQFAGIQA ILDNVKLERR LHLIDFGIKS  240
GSHWIILMQA LANRGDCQLE LLKITAVGTS KQMIEDIGQR LSSFAAEEMK VPFSFKAVVS  300
EMRNLSKDLF EIDSTEAVAV YTDYRLAGML AWPDHLEAVL RFIKSLNPCV MVVIDTEANT  360
NAPTFMERFN EALFLYAAVF DSLQTCMGQN NQSRMAVEGL ILRKIIHNMI ASEGEERIFR  420
NVRLEVWRAL FDKFGIKETE LSESSLYQAH LLAERAAPAY VTYLLLLLEL QFKELCIGLV  480
KLIERGFDKE MGKLPHNKPE EKPFDLEEVM LTQKPFLLLC CQLPPFFQVP HFVGIQSILD  540
NVNKQVGRTG QSSWKPLLIE LIVHLSFLIT AVGTSKQMVE EIGQRLSSFT AENMKVPFSF  600
KAVVSDMKNL NKDIFELDAN EVVAVYSEYH LGGILIIKLY KMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2813545226339GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169309.10.0PREDICTED: DELLA protein RGL3-like
TrEMBLM1BZ590.0M1BZ59_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000562290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1712335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.19e-38RGA-like protein 3