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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf04017g01014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | LBD | ||||||||
Protein Properties | Length: 244aa MW: 26244.7 Da PI: 7.3173 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.3 | 1.4e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +++l+++ pe+ r+ +++sl+yeA+ r+ +P+yG++g++ Peinf101Scf04017g01014.1 4 SCNGCRVLRKGCSENCSIKPCLqwiksPEAQSNATLFLAKFYGRAGLINLINSGPEHLRPGIFRSLLYEACGRIVNPIYGSTGLL 88 6************************************************************************************ PP DUF260 81 lklqqqleqlkaelallke 99 +++++ql+q+++e++l ++ Peinf101Scf04017g01014.1 89 TSGNWQLCQAAVEAVLSGA 107 *************998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.879 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.8E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MRLSCNGCRV LRKGCSENCS IKPCLQWIKS PEAQSNATLF LAKFYGRAGL INLINSGPEH 60 LRPGIFRSLL YEACGRIVNP IYGSTGLLTS GNWQLCQAAV EAVLSGAPIV KLSPDSAAAN 120 DTAMISPSLK ACDIRHVSKE SNSASPDLHK VKTRAKFKRV SAQPKKQSAE IDDAARVMLS 180 WCNREEEIGS PSHDSGLSQQ HTEEPSRGES ADVDSGSVET VEASLTKLDE SDVGLELTLG 240 LCSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235815.1 | 1e-136 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 2e-79 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A3Q7FWA6 | 1e-135 | A0A3Q7FWA6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g119530.2.1 | 1e-135 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 7e-82 | LOB domain-containing protein 41 |