PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03990g00016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 1774aa    MW: 192615 Da    PI: 4.5458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03990g00016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-0717501773125
                                --S---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH    1 yktelCrffartGtCkyGdrCkFaH 25  
                                y+ ++C+ ++r+G Ck Gd+C+F+H
  Peinf101Scf03990g00016.1 1750 YGNRPCP-YYRSGRCKKGDSCNFIH 1773
                                7889***.9999************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.2E-8508574IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.707519585IPR019787Zinc finger, PHD-finger
SuperFamilySSF579033.32E-7519572IPR011011Zinc finger, FYVE/PHD-type
CDDcd155681.99E-20521566No hitNo description
SMARTSM002495.1E-8521567IPR001965Zinc finger, PHD-type
PROSITE patternPS013590522582IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001511.0E-7759844IPR019835SWIB domain
SuperFamilySSF475921.9E-21762840IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.107.9E-27763848IPR003121SWIB/MDM2 domain
PfamPF022012.5E-16766839IPR003121SWIB/MDM2 domain
PROSITE profilePS5136028.6358991032IPR004343Plus-3 domain
SMARTSM007196.1E-488991009IPR004343Plus-3 domain
SuperFamilySSF1590426.41E-349001029IPR004343Plus-3 domain
PfamPF031261.9E-239041007IPR004343Plus-3 domain
SuperFamilySSF552772.35E-1912341293IPR003169GYF domain
CDDcd000721.49E-1912401297No hitNo description
PROSITE profilePS5082917.02812401294IPR003169GYF domain
SMARTSM004443.7E-2112411296IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.4E-1912411294IPR003169GYF domain
PfamPF022134.6E-1612421286IPR003169GYF domain
PROSITE profilePS5010315.12217491774IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-517511773IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-517521774IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-517531774IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1774 aa     Download sequence    Send to blast
MAEDEEAIPN VNNNNTLMAH DPKPEFTATS PVPVVVKDTV LPVGESEVTG ETCQNTGGAD  60
VAVAEGEKVH DVGESAIGLS CSNDGEVTET VKMENEAVAE EGNVTVLEKD ETIEDAVDAM  120
KEEEIKCDDE KVVVVSSNEQ KDEMIEEALN ATKEEEVKSD DDKVVVMSRN ESESNVIIMA  180
EANAVSSDVL IGANDGIDIV SKNDSVEGGE NGEQVLEANA SIVEACIGLG KDETMGAEKV  240
VGTKNEDDDG KAVMTRNEND ETMAEAKEGD MSSDMLISAN NEATKDEEVE ISKMKHEDEA  300
MGMKHEDEAV ENVTDNAEKV VVTRKEEGDE MVSRDDSSAV EARMELEKDG EMEAIKHEEL  360
EIPPRKEEDV EMVSQVDSSA VEARLESEKD GEMEGTKHEE EEIPPRVFDD AGGGGVTLEK  420
EDEATGAENE TDKAEKVVVT QNEIDDEMDT MKQDEVEPVP LDEDEGTGAE DEAANATTEE  480
TETDVPESGK GSGGKRKRKN TKVTVKSKSA GRARKTIGED VCFICFDGGD LVLCDRRGCT  540
KAYHPSCVDR DEDFFRAKGR WNCGWHQCTT CQKNAYYMCY TCTFSLCKGC IKDNVILCVR  600
GNKGFCKNCM RTVKLIEGLG QEEKDVCNST ISSYLVELLI GYKLFWTKGP IDFDDRSSFE  660
YLFKDYFIDL KAKLSLSLKE IADAKNPWKG ADVSATKQEV AETQFDNNGD GGSGSDASIE  720
TLVASKAKRR KIKKRSKSLR KEEDATTTAA TISEGFSTAG TTEWASKELL ELVKHMKSGD  780
TSVLSQFDVQ ALLLEYIKTN KLRDPRRKSQ IICDSRLERL FGKPRVGHFE MLKLLESHFL  840
VKEDSQMDDV QGSVVDTEVN MLEADANVDT PTRGVKDRKR KRKKGENRGP QSNLDEYAAI  900
DVHNISLIFL RRKLVEDLLE EDDKFHDKIV GTFVRIRISG NIQKQDLYRL VQVVGTSKAA  960
EPYKLGKRTT DIVLEILNLN KTEVLSIDTI SNQDFTEEEC KRLRQSIKCG LINRLTVGDI  1020
LDKAMEIQTA RVNDWLESEI LRLSHLRDRA SEKGRKKEYP LECVEKLQLL KTPDERHRRL  1080
EEVPEIHADP KMDPSYESED EDSENVHMRS RDSSFSRRGR GPVSSGTNFS PKDSWGPAGK  1140
VSSKNWELNR SSGQNVLSRS EDGAHSGGGL NEDIWSEGRE RETESKNLEK PTPAANTDPI  1200
GPNSQFLSRT ESFSGASSVC SPVTPQSKVA ETSIKINEAE KMWHYKDPSG KIQGPFSMVQ  1260
LRKWSNTGYF PADLRIWKTT DKQEESTLLT DALAGRFEKV PSAVDNILPT AVLQNRGSER  1320
PQVDQNVGSQ NSPRRLVSSG GGMTSSVDVS ALPTERWSNN DSMNLPSPTP KQDTASWVGG  1380
DGPSVTVANL YPSGNSVHQS PPAPPDGGVR TSASIHNSGG VSVRGSENNY VNSGGDYGPV  1440
PTSEQVAAAQ SGYSLQNAQS FAGSEQHIGL TNSQPGAQDA ALQSESLNMQ NPNVSVLVPG  1500
QPQGYGNWGA ASSSVQNLAG NFSNAGASAL PQPDYWRAPA QGSQQNIQPT TVPTVPWGAG  1560
LQENVSSSTG WGMMPGNPNL GWNGASPAIM NVNWGATVQA MPPGNANSGW VPTGPLPGSS  1620
NSGWVAQSGN PSVQGLAPGN ANPGWVAPAV GAGSTIQGAP SGNGWAMGAA NPGALTQGPP  1680
QGDSNQGRGA PTGNQGTRNN DHHQDRRFSG QMDKGGSRGS NSGYNNSRNW DRQSSFGSRG  1740
SGGSSRGGGY GNRPCPYYRS GRCKKGDSCN FIHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-165155881181Histone-lysine N-methyltransferase NSD3
4gnd_C1e-165155881181Histone-lysine N-methyltransferase NSD3
4gne_A1e-165155881181Histone-lysine N-methyltransferase NSD3
4gnf_A1e-165155881181Histone-lysine N-methyltransferase NSD3
4gng_A1e-165155881181Histone-lysine N-methyltransferase NSD3
4gng_D1e-165155881181Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1877882RKRKRK
2877883RKRKRKK
3879883RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2316650.0AC231665.1 Solanum tuberosum chromosome 11 clone RH021O18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233352.10.0PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2
TrEMBLA0A1U7W4460.0A0A1U7W446_NICSY; zinc finger CCCH domain-containing protein 19-like isoform X2
STRINGXP_009769403.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA323623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding