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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Peinf101Scf03896g00005.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
| Family |
GATA |
| Protein Properties |
Length: 360aa MW: 40282.8 Da PI: 6.8447 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peinf101Scf03896g00005.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 55.1 | 1e-17 | 254 | 288 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +C t kTp+WR gp g+ktLCnaCG++y++ +l
Peinf101Scf03896g00005.1 254 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 288
99*****************************9885 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007623 | Biological Process | circadian rhythm |
| GO:0009416 | Biological Process | response to light stimulus |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
METPEFFQAN YYNSQFTPEK RLSDAKNGDH FVVEDLLDLP NDDCMVNDGT LDVTVTGNSD 60
SSVVDNSCNS SLSGSNRDTQ LPSDNIIGCR NFSDGQFSSE FSVPYEDLAE LEWLSNFVEE 120
SFSSNEMHKI QLIQGMKSRT DESHTHQFIP DPNRASAATN PIFKTEVSVP AKARSKRSRM 180
APGNWASRLL VVSPSTNNNT TEAIQQDMSS SSTESGIIST SIKKTGMKST PKKKAESVPN 240
NNNIMASNSE GRKCLHCATD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP EYRPAASPTF 300
VLTKHSNSHR KVLEIRRQKE LTRAQQQQQQ FFHQNMMFDV PNGDDYLIHQ HIGPDYRQLI
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
