PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03806g00035.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 437aa    MW: 49329.4 Da    PI: 7.7109
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03806g00035.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13e-11388436348
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                               +W+t E++ l  +v+++G g+Wk+I          Rt+ ++k++w++++
  Peinf101Scf03806g00035.1 388 KWSTLEEDTLRAGVQKYGCGNWKLILDSYRdifAVRTAVDLKDKWRNLM 436
                               8********************************88************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.941381437IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-10383436IPR009057Homeodomain-like
SuperFamilySSF466894.68E-14383436IPR009057Homeodomain-like
SMARTSM007177.1E-4385437IPR001005SANT/Myb domain
CDDcd116601.04E-17388437No hitNo description
PfamPF002492.8E-9388435IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDIDISSWIL EFVIQQPIPD TILNSIFQSL PIPNNYFNTK KALILRKIES EISNGSVTEK  60
ILELLELFEE LDFQQGIKSL DDMKSAYCAV AVECTVKILN KYLAGKMAGN DKGEYYEVVR  120
RIWKQRINLL GNVEYNVGIV SDELWEWRDE IEAALLDDRC CEKVIRRSEG VCAVDAVKGF  180
VRGAKERMGP PFIEIVAELY MSDDAFRASL GGVNKEGSCK DNEREVHKGN TLTKKKHVAL  240
RHTRGASTRT CRGVRITDTV RSRVDAAGKQ DDILPTPEIE GAVEALKMSS LELRAVVKDP  300
LPDALKLAET LPFVVRDNVG HQPATDPNLM NQKSAAHTSE RDDSLEDSSQ GSPSGAKRFT  360
LPSPKRMENS PLKKYEFKKI TTRRRSTKWS TLEEDTLRAG VQKYGCGNWK LILDSYRDIF  420
AVRTAVDLKD KWRNLMP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772851.10.0PREDICTED: uncharacterized protein LOC104223173
RefseqXP_016477615.10.0PREDICTED: uncharacterized protein LOC107799057
TrEMBLA0A1S4ALX60.0A0A1S4ALX6_TOBAC; uncharacterized protein LOC107799057
TrEMBLA0A1U7W6M40.0A0A1U7W6M4_NICSY; uncharacterized protein LOC104223173
STRINGXP_009772851.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-19TRF-like 5