PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03438g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 373aa MW: 40715 Da PI: 8.2443 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 112.1 | 2.9e-35 | 74 | 131 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 v YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+e++ Peinf101Scf03438g00009.1 74 VLYKECLKNHAASLGGHAVDGCGEFMPSPSANaTDPTSLKCAACGCHRNFHRREPEDQ 131 78****************************9999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.8E-29 | 74 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-23 | 76 | 130 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.5E-32 | 76 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.489 | 76 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.87E-18 | 235 | 303 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-29 | 236 | 304 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.8E-25 | 242 | 299 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MDITNNNHNH NNNNTSTTTA TTHVTKTTEA ESHETQTPIR IQPVKPISFS NGVLKRHNSL 60 QHQHQLHHHH PVVVLYKECL KNHAASLGGH AVDGCGEFMP SPSANATDPT SLKCAACGCH 120 RNFHRREPED QVLVNHNTTA ALEYQPLHRH HPPPPPPPQL ALPPHNHHGG AHSTGSPINS 180 PSSPPPISSA YYPASAPHML LALSTGGGLS APPPPPPDSN NINNLNQNLI SPVQFSSNPN 240 SRKRFRTKFT QNQKERMLEF AERVGWKIQK RDEDVINEFC RNIGVEKGVL KVWMHNNKNT 300 FGKKSDAVNS NSNVAATVIH NINVNTNGNG FGHVDPTTTA LEFHLHHESS TDKNDDSVSA 360 HNVVGTNGSS SSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-21 | 241 | 300 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620291.1 | 1e-114 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
TrEMBL | A0A1S4B4C9 | 1e-109 | A0A1S4B4C9_TOBAC; zinc-finger homeodomain protein 9-like | ||||
STRING | XP_009620291.1 | 1e-113 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 9e-36 | homeobox protein 30 |