PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03371g00017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family AP2
Protein Properties Length: 545aa    MW: 60613.9 Da    PI: 5.1489
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03371g00017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.81.9e-11323368755
                       AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Peinf101Scf03371g00017.1 323 YRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 368
                               78999*******988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.181175259IPR001471AP2/ERF domain
SMARTSM003801.1E-4183265IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-8222261IPR016177DNA-binding domain
CDDcd000181.86E-10223259No hitNo description
Gene3DG3DSA:3.30.730.106.3E-8223260IPR001471AP2/ERF domain
PROSITE profilePS5103217.319295376IPR001471AP2/ERF domain
SMARTSM003803.7E-27322382IPR001471AP2/ERF domain
PfamPF008472.0E-6323368IPR001471AP2/ERF domain
CDDcd000187.89E-22324378No hitNo description
SuperFamilySSF541718.5E-15324378IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-15324376IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSNWLGFSLT PDFRIDNDDD DESRNEQDHQ ASRNDVNSVE EAPLSVMPLR SAGSLCMMDP  60
FPHCEPTEDC WRYENNHDMT NASTNLDEEG PKLEDFLGCC YSNSPTHEQE IAEINVNMPP  120
SINQSDQELQ HLGREANMKI IPSGLIPYGT STFNNLQMMV PNGQFQNSHH EYANSSNGVY  180
HVPFDGATSV SGFKSWLRQP AAAPLISAAE ENSPSTYQTL SLTKKRPGAG GYDTEDKAAR  240
AYDLAALKYW GPTTHINFPL NTYEKELEEM KNMNRQEFVA HLRRKSSGFS RGASMYRGVT  300
SIEFKGGVLV KWQFPLIKLG KLYRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD  360
IAAIKFRGTS AVTNFDISRY DVKRICSSTT LIAGDLAKRS PSKDSGICNQ SSFEEYNSFT  420
PSSSSPQPIL AITNGEQLQQ PADSFIDMMW STNVADEHRQ NKASSRSSSS APSPKCSGSG  480
SGSAEMSCDF GVGLEYPQAY YSSLQVQDHK FEDARNGNDE NPPNSGRMGN MDLVHPVPMF  540
ALWNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469371e-40AC246937.1 Solanum lycopersicum chromosome 3 clone HBa0033F13, complete sequence.
GenBankAC2470031e-40AC247003.1 Solanum lycopersicum chromosome 3 clone HBa0033F13, complete sequence.
GenBankHG9754421e-40HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755151e-40HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342914.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2G2ZVJ90.0A0A2G2ZVJ9_CAPAN; AP2-like ethylene-responsive transcription factor AIL1
STRINGXP_009763770.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.17e-79AP2 family protein