PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf03074g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 309aa MW: 35884.9 Da PI: 7.9981 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.3 | 6.9e-12 | 4 | 45 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+ + r+ tf kR++g+ KK +E +LC+++ ++i++++++ Peinf101Scf03074g00007.1 4 ISKEKVRNATFKKRKEGLKKKLHEFTTLCNVNGCMIMYGPKQ 45 7888899********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.07E-12 | 1 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.886 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-4 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-13 | 4 | 45 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MELISKEKVR NATFKKRKEG LKKKLHEFTT LCNVNGCMIM YGPKQSDGSN SEPEIWTTNS 60 TTTESLQEEE VQNLIDEYKK SSTVTRSGKT FGLSDYFIDR NKNVEKELIK LKKMNMEKKY 120 PCWVKDMDHL SEIKLRKFIS FLDNKIEKVK FRIDFFKGNM NIASEYFKEA AAEGMELSQL 180 TNYCDNVSHL MVQGGSEWGS FMNNHHEQAF YPYCDSIINH HEQAIYPYWQ YNGAASSCND 240 IRGALMNYET MMTHTAMCNN QRPYSPYVAP TIPQPAPCMM VPSAFPQMDL PRRENEHDVK 300 GKSLPYLRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019255836.1 | 1e-134 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1J6IR27 | 1e-133 | A0A1J6IR27_NICAT; Agamous-like mads-box protein agl80 | ||||
STRING | XP_009774508.1 | 1e-130 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2457 | 22 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 3e-13 | AGAMOUS-like 82 |