PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf03039g03012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 23281.4 Da PI: 7.3438 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.7 | 1.2e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++eA+ r+ +Pv+Gavg++ Peinf101Scf03039g03012.1 2 SCNGCRILRKGCNENCILRQSLqgidsPHAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFEACGRTVNPVHGAVGLL 86 6************************************************************************************ PP DUF260 81 lklqqqleqlkaelall 97 ++++++++q+++e++l Peinf101Scf03039g03012.1 87 WTGNWHVCQSSVETVLK 103 **********9998765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.825 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-26 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MSCNGCRILR KGCNENCILR QSLQGIDSPH AQANATVFVA KFFGRAGLMS FLSSVPESQR 60 PALFQSLLFE ACGRTVNPVH GAVGLLWTGN WHVCQSSVET VLKGGVLRPL PEFSETLPEN 120 DSGSSEANDV DLFKSQSLNF RSKRKVIDDV AEDLDLGLTP GFPVKMNRRT EKRRAATPNS 180 DESDTTTLES GFVCQQNMQQ GHETKLLRLF F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625187.1 | 1e-132 | PREDICTED: LOB domain-containing protein 37-like | ||||
Refseq | XP_016477118.1 | 1e-132 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9FN11 | 2e-67 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A1S4AL07 | 1e-130 | A0A1S4AL07_TOBAC; LOB domain-containing protein 37-like | ||||
STRING | XP_009625187.1 | 1e-131 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67420.1 | 7e-70 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
---|---|---|---|
|