PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf03029g02021.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 355aa MW: 38477.3 Da PI: 6.7412

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf03029g02021.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	5.2e-14	99	143	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ Iar + + Rt+ q+ s+ qky Peinf101Scf03029g02021.1 99 PWTEEEHRLFLLGLQKLGKGDWRGIARNFVTSRTPTQVASHAQKY 143 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.577	92	148	IPR017930	Myb domain
SMART	SM00717	1.2E-10	96	146	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-11	98	142	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-18	98	147	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.24E-16	98	149	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-11	99	143	IPR001005	SANT/Myb domain
CDD	cd00167	5.17E-10	99	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MTRRCSHCNY NGHNSRTCPT RGGGSGGGGG VRLFGVRLTD GSIMKKSASM GNLSSYSSAA 60 AAVSPNNLPG SPDSLHLQDG CLEKFGDKLA SWMLFVGVPW TEEEHRLFLL GLQKLGKGDW 120 RGIARNFVTS RTPTQVASHA QKYFIRQSNA TRRKRRSSLF DIVADTATDA PHPFPEEQIM 180 LPPRAIEGDK EQSTLSATKA VETDFADSLP SLDLSLKSDF ESMEITPSEV EETKQNTTTN 240 DIPPVFPAFF PAYIPVPYPF WPSNTIPVHE DKGAEPSHHQ ILKPIPTVAK EPVNVDELVG 300 MSQLTLADAG SGHIEPSPLS LKLTAEPSRQ SAFHASTPIK SSEITKGETA PIQAV

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MTRRCSHCNY NGHNSRTCPT RGGGSGGGGG VRLFGVRLTD GSIMKKSASM GNLSSYSSAA  60
AAVSPNNLPG SPDSLHLQDG CLEKFGDKLA SWMLFVGVPW TEEEHRLFLL GLQKLGKGDW  120
RGIARNFVTS RTPTQVASHA QKYFIRQSNA TRRKRRSSLF DIVADTATDA PHPFPEEQIM  180
LPPRAIEGDK EQSTLSATKA VETDFADSLP SLDLSLKSDF ESMEITPSEV EETKQNTTTN  240
DIPPVFPAFF PAYIPVPYPF WPSNTIPVHE DKGAEPSHHQ ILKPIPTVAK EPVNVDELVG  300
MSQLTLADAG SGHIEPSPLS LKLTAEPSRQ SAFHASTPIK SSEITKGETA PIQAV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	1e-162	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009626737.1	0.0	PREDICTED: transcription factor MYB1R1
TrEMBL	A0A1S3Y675	0.0	A0A1S3Y675_TOBAC; transcription factor MYB1R1-like
STRING	XP_009626737.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11770	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-73	MYB_related family protein