PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03000g00020.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 377aa    MW: 42113.1 Da    PI: 7.0038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03000g00020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.4e-06214256955
                               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               ++ RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Peinf101Scf03000g00020.1 214 DKVRREKISERMKILQSLVPGC----DKVTGKALMLDEIINYVQSLQ 256
                               589******************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.738205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-7211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-13214272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.24E-7215260No hitNo description
Gene3DG3DSA:4.10.280.102.9E-12218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAAYSYQLQH TNPFLVDTVF LPSSPIKMSG YLEEPNNQNY FSQFYQLPES CQQLPTNMIV  60
HESSYCLDQS TNVTLSQNEP SETNKSSSSN ILDIESSSVT DKIETGNKPM NKKRKAREGS  120
NSSMSSAHSK NVKEGDHGKK KKNNSQVSKD AKEKKGSDDN KKEENKSHEE APTGYIHVRA  180
RRGQATDSHS LAERVLEKIS ERMKILQSLV PGCDKVRREK ISERMKILQS LVPGCDKVTG  240
KALMLDEIIN YVQSLQNQVE FLSMKLASSN PMYYDFGMDL DALMVRPNQN LGGLETPLPN  300
IQQTSITDTT PQAAAVIPNI NNGYPFLDNS ASLLFQQAHF PNSNSQGNGQ LLWGADDQRQ  360
KITIDQSGFS NNFCSFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6539240.0HE653924.1 Nicotiana tabacum mRNA for bHLH trascription factor (upp-L gene), cultivar Samsun nn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312696.10.0transcription factor bHLH137-like
RefseqXP_009786910.10.0PREDICTED: transcription factor bHLH137
TrEMBLA0A1U7XK930.0A0A1U7XK93_NICSY; transcription factor bHLH137
TrEMBLM5BCF40.0M5BCF4_TOBAC; BHLH transcription factor
STRINGXP_009786910.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-56bHLH family protein