PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02920g02003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 468aa    MW: 51070.8 Da    PI: 5.0597
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02920g02003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-165599147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              r +WT+eE++++v+a k++G   W+ I +++g ++t+ q++s+ qk+
  Peinf101Scf02920g02003.1 55 REKWTEEEHQRFVEALKLYGRS-WRQIEEHVG-TKTAIQIRSHAQKF 99
                              789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1649103IPR009057Homeodomain-like
PROSITE profilePS5129422.39350104IPR017930Myb domain
TIGRFAMsTIGR015571.4E-1653102IPR006447Myb domain, plants
SMARTSM007173.8E-1354102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-95495IPR009057Homeodomain-like
PfamPF002499.7E-145598IPR001005SANT/Myb domain
CDDcd001673.49E-1057100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MVAEEMNQIE GARQGASSMI SSKLETVAAQ GKALNCLANE NMLKVRKPYT ITKQREKWTE  60
EEHQRFVEAL KLYGRSWRQI EEHVGTKTAI QIRSHAQKFF AKVARDSGID GDESLNAIDI  120
PPPRPKKKPL HPYPRKMVDS PVADKAVSGQ PESSPSPNAS GRDGRSPDSV LSAIGSDVFE  180
YAVVEQQPSR FSPASCTTDA QTANIISAEN DESSMTSNSS TVDKIHVASK PVAPNTSLIT  240
NYGMECDLFP RGGSCSGESQ AVEAPLASIK LFGQTVLVPD ATKLTLGAPN SCNSLPSIAT  300
EKEINNENLF HGFQGNQANS QFIVAMVPGN IIPPDCWPSQ YRLENNLEGV APFPDTVSWW  360
SWYQDLLYRY ISSCSQTAME TAAPCQASKD EEPQREGSST GSSVGSASEV DDGNRSSETA  420
ESKCTTKSDK WNNIKGFVPY KRCLAERDEN SSGVVLEERE SQRVRVCS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019224849.10.0PREDICTED: protein REVEILLE 1-like isoform X1
TrEMBLA0A314KU970.0A0A314KU97_NICAT; Protein reveille 7
STRINGXP_009768903.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74472127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.13e-41MYB_related family protein